Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   KHN94_RS13330 Genome accession   NZ_HG992758
Coordinates   2926063..2926638 (-) Length   191 a.a.
NCBI ID   WP_182032322.1    Uniprot ID   -
Organism   Vibrio sp. B1FLJ16 isolate B1REV17     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2921063..2931638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHN94_RS13305 (ACOMICROBIO_LOCUS1902) aroB 2921368..2922468 (-) 1101 WP_182032323.1 3-dehydroquinate synthase -
  KHN94_RS13310 (ACOMICROBIO_LOCUS1903) aroK 2922500..2923018 (-) 519 WP_182011505.1 shikimate kinase AroK -
  KHN94_RS13315 (ACOMICROBIO_LOCUS1904) pilQ 2923207..2924940 (-) 1734 WP_182011506.1 type IV pilus secretin PilQ family protein Machinery gene
  KHN94_RS13320 (ACOMICROBIO_LOCUS1905) pilP 2924972..2925487 (-) 516 WP_182011507.1 pilus assembly protein PilP Machinery gene
  KHN94_RS13325 (ACOMICROBIO_LOCUS1906) pilO 2925477..2926070 (-) 594 WP_182011508.1 type 4a pilus biogenesis protein PilO Machinery gene
  KHN94_RS13330 (ACOMICROBIO_LOCUS1907) pilN 2926063..2926638 (-) 576 WP_182032322.1 PilN domain-containing protein Machinery gene
  KHN94_RS13335 (ACOMICROBIO_LOCUS1908) pilM 2926622..2927638 (-) 1017 WP_182032321.1 type IV pilus assembly protein PilM Machinery gene
  KHN94_RS13340 (ACOMICROBIO_LOCUS1909) - 2927781..2930348 (+) 2568 WP_182032320.1 PBP1A family penicillin-binding protein -
  KHN94_RS13345 (ACOMICROBIO_LOCUS1910) oxyR 2930415..2931323 (-) 909 WP_182032319.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22254.60 Da        Isoelectric Point: 6.7670

>NTDB_id=1112542 KHN94_RS13330 WP_182032322.1 2926063..2926638(-) (pilN) [Vibrio sp. B1FLJ16 isolate B1REV17]
MLYRINLLPWRENQREEHRRRFVGLIVLGLFVAVGVQWSIGKFYEYQQDQQQERLDYLTHYIAELDQRIEAMKIAEQEHG
KILERLKVVEGLQLGRNKTTEFMNLMPAAIPEGVYVDKISMNDLEIEISGISDSTPRLATMLDNMERSAKLVDVEMHSIV
HGKSRFGKEFQTFKVSFRFKPVEKVEGGQHG

Nucleotide


Download         Length: 576 bp        

>NTDB_id=1112542 KHN94_RS13330 WP_182032322.1 2926063..2926638(-) (pilN) [Vibrio sp. B1FLJ16 isolate B1REV17]
GTGCTTTATCGCATTAACCTATTACCTTGGCGTGAAAACCAGAGGGAAGAGCATCGTCGCCGGTTTGTAGGACTGATTGT
TCTCGGTCTGTTTGTTGCGGTTGGTGTGCAATGGAGCATCGGAAAGTTCTATGAATATCAGCAGGATCAACAGCAAGAAA
GGCTCGATTATCTTACTCATTATATTGCCGAGCTCGATCAACGTATTGAAGCGATGAAAATTGCTGAGCAGGAGCACGGC
AAAATACTGGAGCGCCTGAAAGTGGTTGAGGGATTACAACTGGGGCGTAACAAAACTACAGAGTTTATGAACCTCATGCC
CGCCGCTATTCCTGAAGGAGTGTATGTCGACAAGATCAGCATGAATGATCTGGAAATTGAAATATCCGGAATTTCTGATA
GTACGCCTCGACTGGCAACCATGCTCGATAACATGGAGCGTTCTGCAAAACTGGTGGATGTGGAAATGCATTCCATTGTT
CATGGTAAATCGCGTTTTGGTAAAGAATTTCAGACCTTTAAGGTGTCCTTTAGGTTCAAACCAGTTGAGAAAGTAGAGGG
AGGTCAGCATGGTTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

81.675

100

0.817
  pilN Vibrio cholerae strain A1552

59.896

100

0.602

Multiple sequence alignment