Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KHN94_RS13060 Genome accession   NZ_HG992758
Coordinates   2866571..2867101 (-) Length   176 a.a.
NCBI ID   WP_182031951.1    Uniprot ID   -
Organism   Vibrio sp. B1FLJ16 isolate B1REV17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2861571..2872101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHN94_RS13040 (ACOMICROBIO_EPCKBFOG_02663) - 2861878..2862210 (-) 333 WP_182010933.1 MSHA biogenesis protein MshK -
  KHN94_RS13045 (ACOMICROBIO_LOCUS1870) gspM 2862203..2862853 (-) 651 WP_182031954.1 type II secretion system protein GspM -
  KHN94_RS13050 (ACOMICROBIO_LOCUS1871) - 2862850..2864295 (-) 1446 WP_182031953.1 MSHA biogenesis protein MshI -
  KHN94_RS13055 (ACOMICROBIO_LOCUS1872) csrD 2864285..2866315 (-) 2031 WP_182031952.1 RNase E specificity factor CsrD -
  KHN94_RS13060 (ACOMICROBIO_LOCUS1873) ssb 2866571..2867101 (-) 531 WP_182031951.1 single-stranded DNA-binding protein Machinery gene
  KHN94_RS13065 (ACOMICROBIO_LOCUS1874) qstR 2867378..2868022 (+) 645 WP_182010921.1 LuxR C-terminal-related transcriptional regulator Regulator
  KHN94_RS13070 (ACOMICROBIO_LOCUS1875) galU 2868189..2869061 (+) 873 WP_182010919.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  KHN94_RS13075 (ACOMICROBIO_LOCUS1876) uvrA 2869206..2872028 (+) 2823 WP_182031950.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19525.59 Da        Isoelectric Point: 5.2170

>NTDB_id=1112537 KHN94_RS13060 WP_182031951.1 2866571..2867101(-) (ssb) [Vibrio sp. B1FLJ16 isolate B1REV17]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQNQQGQDQYTTEVVVQGFNGVMQMLGGRSQGGAPASGGQPQQQGGWGQPQQPPQQPYNAPKQQQAPQQQPQ
QQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=1112537 KHN94_RS13060 WP_182031951.1 2866571..2867101(-) (ssb) [Vibrio sp. B1FLJ16 isolate B1REV17]
ATGGCCAGCCGTGGAGTTAACAAAGTTATTTTGGTGGGGAATCTAGGTAATGACCCTGAAATTCGTTATATGCCTAACGG
CGGTGCAGTAGCAAACATTACTATTGCCACTTCTGAATCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGCTGTTTGGCAAGCTAGCTGAAGTAGCTGGTGAATACCTTCGTAAAGGTTCTCAGGTTTACATT
GAAGGGCAACTTCAGACACGTAAATGGCAAAACCAGCAAGGTCAGGATCAGTACACGACAGAGGTTGTCGTCCAAGGCTT
TAATGGCGTAATGCAAATGCTGGGCGGACGCTCTCAGGGTGGTGCTCCAGCTTCTGGTGGTCAGCCACAGCAGCAAGGTG
GTTGGGGTCAGCCTCAGCAACCTCCACAGCAGCCATACAATGCGCCTAAGCAACAGCAGGCTCCTCAGCAGCAACCGCAA
CAACAGTATAATGAACCACCAATGGATTTCGACGACGACATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.006

100

0.824
  ssb Glaesserella parasuis strain SC1401

56.614

100

0.608
  ssb Neisseria meningitidis MC58

47.191

100

0.477
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.477

Multiple sequence alignment