Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   KHN94_RS13065 Genome accession   NZ_HG992758
Coordinates   2867378..2868022 (+) Length   214 a.a.
NCBI ID   WP_182010921.1    Uniprot ID   -
Organism   Vibrio sp. B1FLJ16 isolate B1REV17     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2862378..2873022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHN94_RS13050 (ACOMICROBIO_LOCUS1871) - 2862850..2864295 (-) 1446 WP_182031953.1 MSHA biogenesis protein MshI -
  KHN94_RS13055 (ACOMICROBIO_LOCUS1872) csrD 2864285..2866315 (-) 2031 WP_182031952.1 RNase E specificity factor CsrD -
  KHN94_RS13060 (ACOMICROBIO_LOCUS1873) ssb 2866571..2867101 (-) 531 WP_182031951.1 single-stranded DNA-binding protein Machinery gene
  KHN94_RS13065 (ACOMICROBIO_LOCUS1874) qstR 2867378..2868022 (+) 645 WP_182010921.1 LuxR C-terminal-related transcriptional regulator Regulator
  KHN94_RS13070 (ACOMICROBIO_LOCUS1875) galU 2868189..2869061 (+) 873 WP_182010919.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  KHN94_RS13075 (ACOMICROBIO_LOCUS1876) uvrA 2869206..2872028 (+) 2823 WP_182031950.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24481.31 Da        Isoelectric Point: 7.9126

>NTDB_id=1112538 KHN94_RS13065 WP_182010921.1 2867378..2868022(+) (qstR) [Vibrio sp. B1FLJ16 isolate B1REV17]
MRKSAYARKLFLISMEDNAAQKVTALEKYIEISIPVISTDALMEAQPEHRNKILLIDFSEHKALVQSIKNLPLVWKNFET
IIFNVPKRLTTDELLCFGQLKGVFYAEDSLEQVGEGLRGIINGQNWLPRNVSSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQDGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1112538 KHN94_RS13065 WP_182010921.1 2867378..2868022(+) (qstR) [Vibrio sp. B1FLJ16 isolate B1REV17]
GTGAGAAAGTCAGCCTACGCCAGAAAGCTATTTCTGATCAGCATGGAAGATAACGCCGCCCAAAAAGTAACAGCACTGGA
AAAATACATCGAGATTAGTATTCCCGTGATCTCAACGGATGCACTAATGGAGGCACAACCGGAACATCGCAACAAAATCC
TGCTCATTGATTTCAGTGAACATAAAGCTCTTGTTCAATCGATTAAAAACTTACCTTTAGTCTGGAAGAATTTTGAGACG
ATTATATTTAACGTTCCGAAGCGCCTTACTACAGATGAACTACTCTGTTTCGGCCAACTAAAAGGGGTGTTTTATGCCGA
AGATTCGCTCGAACAAGTAGGAGAAGGGCTGAGAGGTATTATTAATGGACAAAACTGGTTGCCACGCAATGTCTCCAGCC
AGCTATTGCACTATTACCGCAATGTCATCAACACTCATACAGCGCCCGCGACCGTAGATCTGACCATCCGGGAATTGCAG
GTCTTGCGCTGCCTTCAGGACGGAGCTTCGAACAGTCAAATGGCGGAAGAGTTATTTGTCAGCGAATTTACGATCAAGTC
ACACCTGTACCAAATTTTTAAAAAGCTTTCTGTGAAAAACCGAGTCCAGGCCATTGCGTGGGCAGATCAGAACCTGATGT
CCTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

92.523

100

0.925
  qstR Vibrio campbellii strain DS40M4

86.916

100

0.869
  qstR Vibrio cholerae strain A1552

53.271

100

0.533

Multiple sequence alignment