Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KHO06_RS14895 Genome accession   NZ_HG992751
Coordinates   3206900..3207436 (-) Length   178 a.a.
NCBI ID   WP_212581816.1    Uniprot ID   -
Organism   Vibrio sp. B1FIG11 isolate LMG10946-nano     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3201900..3212436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHO06_RS14875 (ACOMICROBIO_LMKGKHOH_00219) - 3202214..3202543 (-) 330 WP_212581813.1 MSHA biogenesis protein MshK -
  KHO06_RS14880 (ACOMICROBIO_LOCUS1988) gspM 3202536..3203186 (-) 651 WP_212581814.1 type II secretion system protein GspM -
  KHO06_RS14885 (ACOMICROBIO_LOCUS1989) - 3203183..3204631 (-) 1449 WP_212581815.1 MSHA biogenesis protein MshI -
  KHO06_RS14890 (ACOMICROBIO_LOCUS1990) csrD 3204643..3206652 (-) 2010 WP_005432793.1 RNase E specificity factor CsrD -
  KHO06_RS14895 (ACOMICROBIO_LOCUS1991) ssb 3206900..3207436 (-) 537 WP_212581816.1 single-stranded DNA-binding protein Machinery gene
  KHO06_RS14900 (ACOMICROBIO_LOCUS1992) qstR 3207730..3208374 (+) 645 WP_005432827.1 LuxR C-terminal-related transcriptional regulator Regulator
  KHO06_RS14905 (ACOMICROBIO_LOCUS1993) galU 3208539..3209412 (+) 874 Protein_2833 UTP--glucose-1-phosphate uridylyltransferase GalU -
  KHO06_RS14910 (ACOMICROBIO_LOCUS1994) uvrA 3209551..3212373 (+) 2823 WP_212581818.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19804.87 Da        Isoelectric Point: 4.9269

>NTDB_id=1112492 KHO06_RS14895 WP_212581816.1 3206900..3207436(-) (ssb) [Vibrio sp. B1FIG11 isolate LMG10946-nano]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGSAPMGGGQPQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQ
PQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1112492 KHO06_RS14895 WP_212581816.1 3206900..3207436(-) (ssb) [Vibrio sp. B1FIG11 isolate LMG10946-nano]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACGATTGCAACTTCTGAGTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGCTGTTCGGCAAACTTGCTGAAGTAGCAGGCGAGTACCTACGTAAAGGTTCTCAAGTTTACGTT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGACCGCTACTCAACAGAAGTGGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGCAGCGCACCAATGGGCGGTGGTCAGCCTCAACAGCAGCAAC
AAGGTGGTTGGGGTCAACCTCAACAACCAGCTCAGCAGCAATACAATGCTCCTCAGCAACAGCAACAGGCTCCGCAGCAA
CCTCAGCAGCAATACAACGAGCCACCAATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.888

100

0.803
  ssb Glaesserella parasuis strain SC1401

56.021

100

0.601
  ssb Neisseria meningitidis MC58

46.739

100

0.483
  ssb Neisseria gonorrhoeae MS11

46.739

100

0.483

Multiple sequence alignment