Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   KHO06_RS14900 Genome accession   NZ_HG992751
Coordinates   3207730..3208374 (+) Length   214 a.a.
NCBI ID   WP_005432827.1    Uniprot ID   -
Organism   Vibrio sp. B1FIG11 isolate LMG10946-nano     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3202730..3213374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHO06_RS14885 (ACOMICROBIO_LOCUS1989) - 3203183..3204631 (-) 1449 WP_212581815.1 MSHA biogenesis protein MshI -
  KHO06_RS14890 (ACOMICROBIO_LOCUS1990) csrD 3204643..3206652 (-) 2010 WP_005432793.1 RNase E specificity factor CsrD -
  KHO06_RS14895 (ACOMICROBIO_LOCUS1991) ssb 3206900..3207436 (-) 537 WP_212581816.1 single-stranded DNA-binding protein Machinery gene
  KHO06_RS14900 (ACOMICROBIO_LOCUS1992) qstR 3207730..3208374 (+) 645 WP_005432827.1 LuxR C-terminal-related transcriptional regulator Regulator
  KHO06_RS14905 (ACOMICROBIO_LOCUS1993) galU 3208539..3209412 (+) 874 Protein_2833 UTP--glucose-1-phosphate uridylyltransferase GalU -
  KHO06_RS14910 (ACOMICROBIO_LOCUS1994) uvrA 3209551..3212373 (+) 2823 WP_212581818.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24551.46 Da        Isoelectric Point: 8.0591

>NTDB_id=1112493 KHO06_RS14900 WP_005432827.1 3207730..3208374(+) (qstR) [Vibrio sp. B1FIG11 isolate LMG10946-nano]
MKKSAYARKLFLISMEEDAGKKVEALEKYTDIDIPVISTQALMEANPKHRNKILLIDFSEHKELVLSIKNLPLIWKNFET
VVFNVPKRLTTDELLAFGQLKGIFYEESSLEQIGEGLKEIINGQNWLPRNVTSQLLHYYRNVISTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1112493 KHO06_RS14900 WP_005432827.1 3207730..3208374(+) (qstR) [Vibrio sp. B1FIG11 isolate LMG10946-nano]
GTGAAAAAATCGGCTTATGCGAGAAAACTTTTTCTAATCAGCATGGAAGAGGATGCAGGGAAAAAGGTCGAAGCTCTGGA
GAAGTATACAGATATCGACATCCCCGTCATTTCGACCCAAGCACTGATGGAAGCAAACCCGAAGCACCGCAATAAAATCT
TGCTTATCGACTTCAGTGAGCACAAAGAGTTGGTTCTATCGATAAAAAACCTTCCCCTGATTTGGAAGAATTTCGAAACA
GTCGTGTTCAACGTTCCTAAACGTTTGACGACAGATGAGCTATTGGCGTTTGGTCAATTGAAAGGCATCTTCTATGAAGA
GAGTTCTCTTGAGCAGATTGGCGAAGGGTTAAAGGAAATCATTAATGGTCAAAACTGGCTGCCTCGTAATGTCACCAGTC
AACTTCTCCATTATTATCGTAACGTCATTAGTACCCACACCGCTCCTGCCACCGTCGATTTGACCATTCGTGAACTGCAA
GTACTTCGCTGCCTGCAAGCTGGCGCATCAAACAATCAAATGGCCGAAGAGTTATTCGTGAGCGAATTCACTATCAAGTC
TCACCTGTATCAAATTTTTAAGAAGCTTTCGGTCAAAAACCGTGTACAAGCGATTGCTTGGGCTGACCAAAACCTGATGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

100

100

1
  qstR Vibrio parahaemolyticus RIMD 2210633

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.336

100

0.523

Multiple sequence alignment