Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KHN79_RS14015 Genome accession   NZ_HG992749
Coordinates   3056720..3058243 (-) Length   507 a.a.
NCBI ID   WP_182011299.1    Uniprot ID   -
Organism   Vibrio sp. B1FLJ16     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3051720..3063243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHN79_RS13995 (ACOMICROBIO_LOCUS2016) - 3053030..3054016 (+) 987 WP_182011324.1 serine/threonine protein kinase -
  KHN79_RS14000 (ACOMICROBIO_LOCUS2017) - 3054050..3054652 (+) 603 WP_182011301.1 thiol:disulfide interchange protein DsbA/DsbL -
  KHN79_RS14005 (ACOMICROBIO_LOCUS2018) - 3054710..3055589 (-) 880 Protein_2655 acyltransferase -
  KHN79_RS14010 (ACOMICROBIO_FLGHMIGD_02836) - 3055737..3056693 (+) 957 WP_182011300.1 DUF2860 domain-containing protein -
  KHN79_RS14015 (ACOMICROBIO_LOCUS2019) comM 3056720..3058243 (-) 1524 WP_182011299.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KHN79_RS14020 (ACOMICROBIO_LOCUS2020) ilvG 3058709..3060355 (+) 1647 WP_182011298.1 acetolactate synthase 2 catalytic subunit -
  KHN79_RS14025 (ACOMICROBIO_FLGHMIGD_02839) ilvM 3060367..3060651 (+) 285 WP_014233403.1 acetolactate synthase 2 small subunit -
  KHN79_RS14030 (ACOMICROBIO_LOCUS2021) ilvD 3060882..3062723 (+) 1842 WP_182011297.1 dihydroxy-acid dehydratase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54938.88 Da        Isoelectric Point: 7.6192

>NTDB_id=1112456 KHN79_RS14015 WP_182011299.1 3056720..3058243(-) (comM) [Vibrio sp. B1FLJ16]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASDQITADKLKNYEFVGELALSGGLRPVKGVLPAALAASKVQRYLVVPHLNGDQAALVGKDQHKSAQSL
LEVCAELCGQHRLNLHQAPERVVTEDHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKLRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLSEGGDR
GEPTAVVKERVNYARSQMLNRSGKVNALLGSREIEAFCPLQKSDAEFLETALHRLGLSIRAYHRIIKVARTIADLEGADQ
IERSHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=1112456 KHN79_RS14015 WP_182011299.1 3056720..3058243(-) (comM) [Vibrio sp. B1FLJ16]
ATGGGGCTGGCAATCATTCATAGTAGGGCAAGTGTCGGGGTACAAGCGCCGTCAGTGAGCGTGGAAGTACATATTAGTAA
TGGCATGCCAGGCTTTACTCTGGTTGGGTTGCCGGAAACTACAGTAAAGGAATCCAAAGACCGGGTACGCAGTGCGATCA
TTAACTCTAATTTTCAGTTTCCGGCCAAGCGTATTACCGTCAATTTAGCTCCGGCGGATCTGCCCAAGGAGGGTGGTCGC
TTTGATTTACCCATTGCATTGGGTATTTTGGCTGCTTCGGATCAAATCACGGCAGATAAGCTCAAAAACTACGAATTTGT
CGGTGAGTTAGCGCTTTCTGGCGGTCTCCGTCCGGTGAAAGGTGTGCTGCCCGCTGCTTTAGCTGCAAGCAAGGTTCAGC
GTTATTTGGTTGTGCCACATTTGAATGGTGATCAGGCTGCGCTGGTGGGTAAAGATCAGCATAAATCGGCACAATCGTTA
CTGGAAGTGTGTGCTGAGTTGTGCGGCCAGCATCGACTTAATTTACATCAGGCTCCTGAACGTGTTGTAACAGAAGACCA
TGGTCGAGATCTGCAGGATATCATTGGTCAGCAGCAGGGTAAGCGCGCTTTAGAAATTGCGGCGGCAGGTAATCATAATC
TGCTGTTTTTAGGTCCGCCCGGTACCGGAAAAACGATGTTGGCATCGCGGCTGTGTGATTTGTTGCCTGAAATGAGCGAT
GAAGAAGCAATGGAAACTGCCTCGGTGGCATCGCTGACTCAGAGTGAAATCAACGAGCATAACTGGAAGTTGCGGCCATT
CCGTGCTCCGCACCACTCAAGTTCGATGGCTGCTTTGGTCGGCGGTGGTTCGGTGCCAAGGCCGGGGGAGATTTCTTTGG
CCCACAATGGCTTATTGTTTCTGGATGAAATGCCGGAGTTTGATCGTAAAGTGCTGGATTCACTGCGTGAACCGCTCGAA
TCCGGTGAGATCATTATCTCACGTGCTCAAGGGAAAACCCGCTTTCCCGCTCGTTTTCAGCTGGTGGGTGCACTTAATCC
AAGCCCGACAGGCTATTACGAAGGAAATCAGGCGCGCACCAACCCGCAAGCCATTTTGCGTTACCTCGGACGCTTGTCGG
GACCACTACTGGACAGATTCGATATGTCACTGGAAATCCCGGCTTTGCCAAAGGGAACCTTGTCTGAAGGCGGTGACCGG
GGTGAACCTACAGCAGTGGTGAAAGAGCGGGTTAACTATGCCCGTTCTCAGATGCTCAATCGCAGTGGTAAGGTTAACGC
ACTGCTCGGCAGCCGCGAGATAGAAGCGTTCTGTCCGCTGCAAAAAAGTGATGCAGAATTCTTAGAGACCGCTTTGCACC
GCCTTGGTTTGTCTATCCGGGCTTATCACCGGATCATAAAGGTCGCGCGTACCATCGCTGATCTTGAAGGTGCTGATCAG
ATTGAGCGCTCCCATCTGGCGGAAGCACTCGGGTATCGTGCAATGGACAGGTTACTGAAACAATTGACGGCTCAAGCGGT
GTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

93.886

100

0.939
  comM Vibrio cholerae strain A1552

85.404

100

0.854
  comM Haemophilus influenzae Rd KW20

66.078

100

0.665
  comM Glaesserella parasuis strain SC1401

64.314

100

0.647
  comM Legionella pneumophila str. Paris

49.698

98.028

0.487
  comM Legionella pneumophila strain ERS1305867

49.698

98.028

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.118

100

0.444

Multiple sequence alignment