Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KHN79_RS12285 Genome accession   NZ_HG992749
Coordinates   2688488..2689030 (-) Length   180 a.a.
NCBI ID   WP_182010923.1    Uniprot ID   -
Organism   Vibrio sp. B1FLJ16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2683488..2694030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHN79_RS12275 (ACOMICROBIO_LOCUS1786) csrD 2683611..2685641 (-) 2031 WP_182010927.1 RNase E specificity factor CsrD -
  KHN79_RS12280 (ACOMICROBIO_LOCUS1787) - 2685980..2687866 (-) 1887 WP_182010925.1 reverse transcriptase domain-containing protein -
  KHN79_RS12285 (ACOMICROBIO_LOCUS1788) ssb 2688488..2689030 (-) 543 WP_182010923.1 single-stranded DNA-binding protein Machinery gene
  KHN79_RS12290 (ACOMICROBIO_LOCUS1789) qstR 2689307..2689951 (+) 645 WP_182010921.1 LuxR C-terminal-related transcriptional regulator Regulator
  KHN79_RS12295 (ACOMICROBIO_LOCUS1790) galU 2690118..2690990 (+) 873 WP_182010919.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  KHN79_RS12300 (ACOMICROBIO_LOCUS1791) uvrA 2691135..2693957 (+) 2823 WP_182010917.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19981.07 Da        Isoelectric Point: 5.2170

>NTDB_id=1112446 KHN79_RS12285 WP_182010923.1 2688488..2689030(-) (ssb) [Vibrio sp. B1FLJ16]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQNQQGQDQYTTEVVVQGFNGVMQMLGGRSQGGAPASGGQPQQQGGWGQPQQPAQQPYNAPKQQQPQQQAPQ
QQPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=1112446 KHN79_RS12285 WP_182010923.1 2688488..2689030(-) (ssb) [Vibrio sp. B1FLJ16]
ATGGCCAGCCGTGGAGTTAACAAAGTTATTTTGGTGGGGAATCTAGGTAATGACCCTGAAATTCGTTATATGCCTAACGG
CGGTGCAGTAGCAAACATTACTATTGCCACTTCTGAATCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGCTGTTTGGCAAGCTAGCTGAAGTAGCTGGTGAATACCTTCGTAAAGGTTCTCAGGTTTACATT
GAAGGGCAACTTCAGACACGTAAATGGCAAAACCAGCAAGGTCAGGATCAGTACACGACAGAGGTTGTCGTCCAAGGCTT
TAATGGTGTAATGCAAATGCTGGGCGGACGCTCTCAGGGTGGTGCTCCAGCTTCAGGTGGTCAACCGCAGCAGCAAGGTG
GTTGGGGTCAGCCTCAGCAACCTGCACAGCAGCCATACAATGCGCCTAAGCAACAACAGCCACAACAACAGGCTCCGCAG
CAGCAACCGCAGCAACAGTATAATGAACCACCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.435

100

0.822
  ssb Glaesserella parasuis strain SC1401

57.292

100

0.611
  ssb Neisseria meningitidis MC58

47.191

98.889

0.467
  ssb Neisseria gonorrhoeae MS11

47.191

98.889

0.467

Multiple sequence alignment