Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   KHN79_RS12290 Genome accession   NZ_HG992749
Coordinates   2689307..2689951 (+) Length   214 a.a.
NCBI ID   WP_182010921.1    Uniprot ID   -
Organism   Vibrio sp. B1FLJ16     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2684307..2694951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHN79_RS12280 (ACOMICROBIO_LOCUS1787) - 2685980..2687866 (-) 1887 WP_182010925.1 reverse transcriptase domain-containing protein -
  KHN79_RS12285 (ACOMICROBIO_LOCUS1788) ssb 2688488..2689030 (-) 543 WP_182010923.1 single-stranded DNA-binding protein Machinery gene
  KHN79_RS12290 (ACOMICROBIO_LOCUS1789) qstR 2689307..2689951 (+) 645 WP_182010921.1 LuxR C-terminal-related transcriptional regulator Regulator
  KHN79_RS12295 (ACOMICROBIO_LOCUS1790) galU 2690118..2690990 (+) 873 WP_182010919.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  KHN79_RS12300 (ACOMICROBIO_LOCUS1791) uvrA 2691135..2693957 (+) 2823 WP_182010917.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24481.31 Da        Isoelectric Point: 7.9126

>NTDB_id=1112447 KHN79_RS12290 WP_182010921.1 2689307..2689951(+) (qstR) [Vibrio sp. B1FLJ16]
MRKSAYARKLFLISMEDNAAQKVTALEKYIEISIPVISTDALMEAQPEHRNKILLIDFSEHKALVQSIKNLPLVWKNFET
IIFNVPKRLTTDELLCFGQLKGVFYAEDSLEQVGEGLRGIINGQNWLPRNVSSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQDGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1112447 KHN79_RS12290 WP_182010921.1 2689307..2689951(+) (qstR) [Vibrio sp. B1FLJ16]
GTGAGAAAGTCAGCCTACGCCAGAAAGCTATTTCTGATCAGCATGGAAGATAACGCCGCCCAAAAAGTAACAGCACTGGA
AAAATACATCGAGATTAGTATTCCCGTGATCTCAACGGATGCACTAATGGAGGCACAGCCGGAACATCGCAATAAAATCC
TGCTCATTGATTTCAGTGAACATAAAGCTCTTGTTCAATCGATTAAAAACTTGCCTTTAGTCTGGAAGAATTTTGAGACG
ATTATATTTAACGTTCCGAAGCGCCTTACTACAGATGAACTGCTCTGTTTCGGCCAACTAAAAGGGGTGTTTTATGCCGA
AGATTCGCTCGAACAAGTAGGAGAAGGGCTAAGAGGTATTATTAATGGACAAAACTGGTTGCCACGCAATGTCTCCAGCC
AGCTATTGCACTATTACCGCAATGTCATCAACACTCATACAGCGCCCGCGACCGTAGATCTGACCATCCGGGAATTGCAG
GTCCTACGTTGTCTTCAGGACGGAGCCTCGAACAGCCAAATGGCGGAAGAGTTATTTGTCAGCGAATTTACAATCAAGTC
ACACCTGTATCAAATATTTAAAAAGCTTTCGGTGAAAAACCGTGTCCAAGCCATTGCGTGGGCAGATCAGAACCTGATGT
CCTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

92.523

100

0.925
  qstR Vibrio campbellii strain DS40M4

86.916

100

0.869
  qstR Vibrio cholerae strain A1552

53.271

100

0.533

Multiple sequence alignment