Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KJB05_RS02210 Genome accession   NZ_HG992742
Coordinates   472684..473223 (+) Length   179 a.a.
NCBI ID   WP_005438106.1    Uniprot ID   A0A0C1VQJ6
Organism   Vibrio sp. B1ASS3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 467684..478223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJB05_RS02195 (ACOMICROBIO_LOCUS295) - 469185..470564 (-) 1380 WP_213053101.1 IS4 family transposase -
  KJB05_RS02200 (ACOMICROBIO_LOCUS296) galU 470711..471583 (-) 873 WP_009707668.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  KJB05_RS02205 (ACOMICROBIO_LOCUS297) qstR 471746..472390 (-) 645 WP_009707667.1 LuxR C-terminal-related transcriptional regulator Regulator
  KJB05_RS02210 (ACOMICROBIO_LOCUS298) ssb 472684..473223 (+) 540 WP_005438106.1 single-stranded DNA-binding protein Machinery gene
  KJB05_RS02215 (ACOMICROBIO_LOCUS299) csrD 473518..475527 (+) 2010 WP_208446463.1 RNase E specificity factor CsrD -
  KJB05_RS02220 (ACOMICROBIO_LOCUS300) - 475539..476528 (+) 990 Protein_383 MSHA biogenesis protein MshI -
  KJB05_RS02225 (ACOMICROBIO_NCLOACGD_00452) - 476562..477968 (-) 1407 WP_208446529.1 IS66 family transposase -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19888.94 Da        Isoelectric Point: 4.9269

>NTDB_id=1112379 KJB05_RS02210 WP_005438106.1 472684..473223(+) (ssb) [Vibrio sp. B1ASS3]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKGTGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPMGGGQPQQQQQGGWGQPQQPAQQQQYNAPQQQQQAPQ
QPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=1112379 KJB05_RS02210 WP_005438106.1 472684..473223(+) (ssb) [Vibrio sp. B1ASS3]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACAATTGCAACTTCTGAGTCATGGCGTGACAAAGGGACTGGCGAACAGCGTGAGAAAACAG
AATGGCACCGTGTTGTGTTATTCGGCAAACTTGCTGAAGTAGCAGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACGTT
GAAGGCCAGCTTCAAACTCGTAAATGGCAAGACCAAAGTGGTCAAGACCGTTACTCAACAGAAGTTGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGTGGTCGTGCTCAAGGTGGCGCACCTATGGGCGGTGGTCAGCCACAACAGCAACAAC
AAGGTGGTTGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAGCAATACAATGCTCCTCAGCAACAACAACAGGCTCCGCAG
CAACCACAGCAGCAATACAACGAGCCACCAATGGACTTCGACGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C1VQJ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80

100

0.804
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.581
  ssb Neisseria meningitidis MC58

46.927

100

0.469
  ssb Neisseria gonorrhoeae MS11

46.927

100

0.469

Multiple sequence alignment