Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   KJB05_RS02205 Genome accession   NZ_HG992742
Coordinates   471746..472390 (-) Length   214 a.a.
NCBI ID   WP_009707667.1    Uniprot ID   A0A812F937
Organism   Vibrio sp. B1ASS3     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 466746..477390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJB05_RS02195 (ACOMICROBIO_LOCUS295) - 469185..470564 (-) 1380 WP_213053101.1 IS4 family transposase -
  KJB05_RS02200 (ACOMICROBIO_LOCUS296) galU 470711..471583 (-) 873 WP_009707668.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  KJB05_RS02205 (ACOMICROBIO_LOCUS297) qstR 471746..472390 (-) 645 WP_009707667.1 LuxR C-terminal-related transcriptional regulator Regulator
  KJB05_RS02210 (ACOMICROBIO_LOCUS298) ssb 472684..473223 (+) 540 WP_005438106.1 single-stranded DNA-binding protein Machinery gene
  KJB05_RS02215 (ACOMICROBIO_LOCUS299) csrD 473518..475527 (+) 2010 WP_208446463.1 RNase E specificity factor CsrD -
  KJB05_RS02220 (ACOMICROBIO_LOCUS300) - 475539..476528 (+) 990 Protein_383 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24508.40 Da        Isoelectric Point: 9.5077

>NTDB_id=1112378 KJB05_RS02205 WP_009707667.1 471746..472390(-) (qstR) [Vibrio sp. B1ASS3]
MKKSAYARKLFLISMEDGAAKKVEALEKYTDINIPVISTQALMEANPKHRNKILLIDFSEHKELVQSIKNLPLIWKNFET
VVFNVPKRLTTDELLTFGQLKGIFYQDSSLEQIGEGLKEIVNGQNWLPRNVTSQLLHYYRNVISTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1112378 KJB05_RS02205 WP_009707667.1 471746..472390(-) (qstR) [Vibrio sp. B1ASS3]
GTGAAAAAATCGGCTTATGCGAGAAAACTTTTTCTGATCAGCATGGAAGATGGTGCAGCGAAAAAGGTCGAAGCTCTGGA
AAAATACACCGACATCAACATCCCTGTCATTTCGACTCAAGCTTTGATGGAAGCCAACCCGAAACACCGCAATAAAATCT
TGTTGATCGACTTTAGTGAACATAAAGAACTGGTTCAATCGATCAAAAATCTGCCGTTGATCTGGAAAAATTTTGAAACC
GTGGTGTTCAATGTGCCTAAGCGTTTGACTACAGATGAATTGCTGACATTTGGGCAATTGAAAGGCATTTTCTACCAAGA
TAGTTCTTTAGAACAAATTGGGGAGGGTTTAAAAGAGATCGTAAACGGTCAGAACTGGTTACCTCGCAATGTGACTAGCC
AACTCCTGCATTATTATCGCAATGTCATCAGTACCCACACAGCGCCAGCCACCGTCGATTTGACCATTCGTGAGCTGCAA
GTCTTACGCTGCCTTCAAGCGGGGGCATCGAACAATCAAATGGCGGAAGAGTTGTTCGTTAGTGAGTTCACCATCAAGTC
ACACCTGTATCAAATTTTTAAGAAGCTCTCGGTAAAAAACCGCGTACAAGCCATTGCTTGGGCTGACCAAAATCTGATGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A812F937

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

95.794

100

0.958
  qstR Vibrio parahaemolyticus RIMD 2210633

89.72

100

0.897
  qstR Vibrio cholerae strain A1552

52.804

100

0.528

Multiple sequence alignment