Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   KJB05_RS01925 Genome accession   NZ_HG992742
Coordinates   409526..410104 (+) Length   192 a.a.
NCBI ID   WP_005438427.1    Uniprot ID   A0A0C1W3A3
Organism   Vibrio sp. B1ASS3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 404526..415104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJB05_RS01915 (ACOMICROBIO_LOCUS259) - 405777..408347 (-) 2571 WP_208445805.1 PBP1A family penicillin-binding protein -
  KJB05_RS01920 (ACOMICROBIO_LOCUS260) pilM 408526..409542 (+) 1017 WP_208445806.1 type IV pilus assembly protein PilM Machinery gene
  KJB05_RS01925 (ACOMICROBIO_LOCUS261) pilN 409526..410104 (+) 579 WP_005438427.1 PilN domain-containing protein Machinery gene
  KJB05_RS01930 (ACOMICROBIO_LOCUS262) pilO 410097..410690 (+) 594 WP_039988232.1 type 4a pilus biogenesis protein PilO Machinery gene
  KJB05_RS01935 (ACOMICROBIO_LOCUS263) pilP 410680..411195 (+) 516 WP_005438430.1 pilus assembly protein PilP Machinery gene
  KJB05_RS01940 (ACOMICROBIO_LOCUS264) pilQ 411230..412978 (+) 1749 WP_199435956.1 type IV pilus secretin PilQ family protein Machinery gene
  KJB05_RS01945 (ACOMICROBIO_LOCUS265) aroK 413168..413686 (+) 519 WP_005438434.1 shikimate kinase AroK -
  KJB05_RS01950 (ACOMICROBIO_LOCUS266) aroB 413718..414818 (+) 1101 WP_005438436.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22231.64 Da        Isoelectric Point: 9.4720

>NTDB_id=1112374 KJB05_RS01925 WP_005438427.1 409526..410104(+) (pilN) [Vibrio sp. B1ASS3]
MLHHINLLAWRENQREEHRRRFIGLIVLGAIAALGVQWGIGKYYQYQQDQQQQRLDYLAHYISQLDKRIEAMKIAEQEHG
KILERLKIVEGLQNGRNKTTEFMNLMPSVIPEGVYVDKIKMNDYEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFKGASIKEGGKQHG

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1112374 KJB05_RS01925 WP_005438427.1 409526..410104(+) (pilN) [Vibrio sp. B1ASS3]
ATGCTGCATCACATTAACCTCCTCGCTTGGCGCGAAAATCAACGTGAAGAACATCGTCGACGTTTTATTGGTTTGATTGT
TCTTGGTGCGATTGCTGCGCTGGGCGTGCAGTGGGGCATCGGTAAGTACTACCAATACCAACAAGACCAGCAACAACAGC
GCCTAGACTATTTAGCTCACTATATATCTCAGCTTGATAAGCGAATTGAAGCAATGAAGATTGCTGAGCAAGAGCACGGC
AAGATCTTAGAGCGTTTAAAGATCGTCGAAGGGTTACAAAACGGACGCAACAAAACCACTGAGTTCATGAACTTGATGCC
ATCAGTTATTCCTGAAGGTGTGTATGTCGACAAGATTAAGATGAATGACTACGAAATCGAGATCTCAGGAATTTCAGACA
GTACGCCGCGTCTCGCGACAATGCTCGACAACATGGAGCGTTCGGCAAAATTGTTAGATGTCGAGATGCACTCCATTGTC
CATGGTAAAGCCCGTTTCGGTAAAGAGTTTCAGACGTTCAAAGTCTCCTTCATGTTTAAAGGTGCCTCTATAAAAGAAGG
AGGTAAACAGCATGGTTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C1W3A3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

95.312

100

0.953
  pilN Vibrio cholerae strain A1552

58.854

100

0.589

Multiple sequence alignment