Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SMB2099_RS21940 Genome accession   NZ_HG738868
Coordinates   4639679..4640212 (-) Length   177 a.a.
NCBI ID   WP_033654707.1    Uniprot ID   -
Organism   Serratia marcescens SMB2099     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4634679..4645212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMB2099_RS21910 (SMB2099_4283) - 4635003..4636364 (-) 1362 WP_060427053.1 NCS2 family permease -
  SMB2099_RS21915 (SMB2099_4284) - 4636697..4637104 (-) 408 WP_033636186.1 VOC family protein -
  SMB2099_RS21920 (SMB2099_4285) - 4637152..4637820 (-) 669 WP_033649718.1 glutathione S-transferase -
  SMB2099_RS21925 (SMB2099_4286) - 4637817..4638260 (-) 444 WP_033636188.1 lipocalin-like domain-containing protein -
  SMB2099_RS21930 (SMB2099_4287) - 4638457..4638717 (+) 261 WP_033636189.1 YdgH/BhsA/McbA-like domain containing protein -
  SMB2099_RS21935 (SMB2099_4288) - 4638867..4639616 (+) 750 WP_039569629.1 3-oxoacyl-ACP reductase family protein -
  SMB2099_RS21940 (SMB2099_4289) ssb 4639679..4640212 (-) 534 WP_033654707.1 single-stranded DNA-binding protein SSB1 Machinery gene
  SMB2099_RS21945 (SMB2099_4290) uvrA 4640490..4643318 (+) 2829 WP_060427051.1 excinuclease ABC subunit UvrA -
  SMB2099_RS21950 (SMB2099_4291) - 4643548..4644600 (+) 1053 WP_060427049.1 NAD(P)-dependent alcohol dehydrogenase -
  SMB2099_RS21955 (SMB2099_4292) maa 4644630..4645187 (-) 558 WP_039569636.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18865.76 Da        Isoelectric Point: 5.2358

>NTDB_id=1112007 SMB2099_RS21940 WP_033654707.1 4639679..4640212(-) (ssb) [Serratia marcescens SMB2099]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
AASSNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=1112007 SMB2099_RS21940 WP_033654707.1 4639679..4640212(-) (ssb) [Serratia marcescens SMB2099]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAACCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GTCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCGCGCCCGGCGCAAAACAGCGCTCCG
GCGGCCAGCAGCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.824

100

0.78
  ssb Glaesserella parasuis strain SC1401

59.358

100

0.627
  ssb Neisseria meningitidis MC58

47.594

100

0.503
  ssb Neisseria gonorrhoeae MS11

47.594

100

0.503
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.362

Multiple sequence alignment