Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GJA_RS21745 Genome accession   NZ_HG322949
Coordinates   5051728..5053245 (+) Length   505 a.a.
NCBI ID   WP_038496507.1    Uniprot ID   W0V8Y4
Organism   Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5046728..5058245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJA_RS21720 (GJA_4677) gshA 5046762..5048060 (-) 1299 WP_038496493.1 glutamate--cysteine ligase -
  GJA_RS21725 (GJA_4678) amt 5048261..5049820 (-) 1560 WP_038496496.1 ammonium transporter -
  GJA_RS21730 (GJA_4679) - 5049832..5050170 (-) 339 WP_038496499.1 P-II family nitrogen regulator -
  GJA_RS21735 (GJA_4680) - 5050182..5050934 (-) 753 WP_038496502.1 TorF family putative porin -
  GJA_RS21740 (GJA_4681) - 5051210..5051458 (+) 249 WP_038496504.1 accessory factor UbiK family protein -
  GJA_RS21745 (GJA_4682) comM 5051728..5053245 (+) 1518 WP_038496507.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GJA_RS21750 (GJA_4683) - 5053298..5053843 (+) 546 WP_038496510.1 hypothetical protein -
  GJA_RS21755 (GJA_4684) - 5054052..5054393 (+) 342 WP_038496512.1 DUF1840 domain-containing protein -
  GJA_RS21765 (GJA_4686) - 5054864..5055640 (-) 777 WP_038496515.1 enoyl-CoA hydratase -
  GJA_RS21770 (GJA_4687) - 5055822..5057039 (+) 1218 WP_242404684.1 MFS transporter -
  GJA_RS21775 (GJA_4688) - 5057164..5057601 (+) 438 WP_038496518.1 universal stress protein -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 54835.07 Da        Isoelectric Point: 8.4232

>NTDB_id=1111910 GJA_RS21745 WP_038496507.1 5051728..5053245(+) (comM) [Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628]
MSLAVLKSRALAGMDAPEVSVEVHLANGLPSFTIVGLPDTEVKESRDRVRAALQNCGFDMPARRITANLAPADLPKESGR
FDLPIALGILAASGQIPGERFHEYEFAGELSLSGQLRPVRGALAMTFAMQGGDGDVARAFILPQANADEAALVKDANIFP
ASTLLQVCAHFAARDPQAMLQRHHSAIAVAVFDYPDFSDVKGQQQAKRALEVAAAGMHNVLMVGPPGAGKSMLAVRFPGL
LPPMTDKEALESAAVQSLSGNFTVANWKRRPYRAPHHTCSGVALVGGGNLPRPGEISLAHCGILFLDEIAEFDRRVLEVL
RQPLESGHITISRAARQADFPARFQLIAAMNPCPCGFLGAASAQCRCTPDAILRYHSRLSGPLLDRIDMQIEVAAMIPSS
LSARAEGESTADIRHRVMRAFELQLARQNKSNQHLSTREIDRYCTLDIAGEQLLQTAMVRLHWSARAYHRVLKVARTIAD
LAAAPAIQRQHIAEAIQYRRALRER

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=1111910 GJA_RS21745 WP_038496507.1 5051728..5053245(+) (comM) [Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628]
ATGAGCTTAGCTGTCTTGAAAAGCCGCGCGCTGGCCGGCATGGATGCGCCGGAGGTGAGTGTCGAAGTTCATCTCGCCAA
CGGCTTGCCCTCGTTCACCATCGTTGGCTTGCCCGATACCGAAGTCAAGGAGTCGCGCGACCGGGTGCGCGCCGCGCTGC
AAAATTGCGGCTTTGACATGCCGGCGCGGCGCATCACCGCCAACCTGGCGCCGGCCGACTTGCCGAAGGAATCCGGCAGG
TTCGATTTGCCGATTGCCTTGGGCATCCTGGCCGCGTCCGGCCAAATCCCCGGCGAGCGTTTCCATGAATATGAGTTTGC
CGGCGAACTGTCGCTGTCAGGACAATTGCGGCCGGTGCGCGGCGCCCTGGCGATGACCTTTGCGATGCAAGGTGGCGACG
GCGATGTCGCGCGCGCATTCATCTTGCCGCAGGCAAACGCCGACGAAGCGGCGCTGGTCAAAGATGCCAACATCTTCCCT
GCCAGCACTTTGCTGCAGGTGTGCGCCCACTTCGCCGCGCGCGACCCGCAAGCGATGTTGCAACGCCATCATTCGGCGAT
CGCCGTAGCCGTATTCGATTATCCGGACTTTTCAGATGTGAAAGGCCAGCAACAAGCCAAGCGCGCATTGGAAGTAGCGG
CCGCCGGCATGCACAACGTGTTGATGGTCGGCCCGCCGGGCGCCGGCAAGAGCATGCTGGCGGTGCGCTTCCCTGGCTTG
TTGCCACCGATGACAGATAAGGAAGCGCTGGAATCGGCGGCGGTGCAATCGCTGAGCGGTAATTTTACGGTCGCCAACTG
GAAGAGGCGGCCGTATCGGGCGCCGCACCATACTTGTTCCGGCGTGGCGTTGGTGGGCGGCGGCAATCTGCCGCGTCCAG
GAGAAATTTCCTTGGCCCATTGTGGTATTTTATTCCTTGATGAAATCGCCGAATTCGACCGGCGCGTGCTGGAAGTCTTG
CGCCAGCCGCTGGAATCGGGCCACATCACGATTTCGCGCGCGGCGCGCCAGGCCGATTTTCCGGCGCGCTTTCAACTGAT
TGCCGCGATGAATCCATGTCCATGCGGATTCCTCGGAGCGGCCTCGGCACAATGCCGTTGCACGCCGGACGCCATCCTGC
GTTATCACAGCCGCTTGTCGGGTCCCTTGCTCGACCGCATAGACATGCAGATTGAAGTGGCCGCGATGATACCCTCATCG
CTGAGCGCCAGGGCTGAAGGCGAAAGCACGGCCGACATCCGGCACAGAGTGATGCGCGCCTTTGAACTGCAACTTGCGCG
CCAGAATAAATCCAACCAGCACCTGAGCACCCGTGAAATCGACCGCTATTGCACACTCGATATCGCTGGCGAACAATTGC
TGCAAACGGCGATGGTGCGTCTGCACTGGTCGGCACGCGCTTATCACCGGGTGCTCAAGGTAGCCCGTACCATCGCCGAC
CTGGCCGCGGCGCCGGCGATACAACGCCAGCATATTGCCGAAGCCATCCAATATCGCCGTGCCTTGCGCGAGCGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(196-396)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-499)

Subunit ChlI of Mg-chelatase (ChlI)

(21-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W0V8Y4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.691

99.208

0.543
  comM Vibrio campbellii strain DS40M4

54.092

99.208

0.537
  comM Glaesserella parasuis strain SC1401

52.569

100

0.527
  comM Haemophilus influenzae Rd KW20

51.874

100

0.521
  comM Legionella pneumophila str. Paris

49.901

100

0.501
  comM Legionella pneumophila strain ERS1305867

49.901

100

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.931

100

0.469

Multiple sequence alignment