Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACMCNG_RS06460 Genome accession   NZ_AP038785
Coordinates   1451175..1452395 (+) Length   406 a.a.
NCBI ID   WP_226691635.1    Uniprot ID   -
Organism   Rodentibacter sp. THUN1654     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1446175..1457395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMCNG_RS06435 (THUN1654_12360) lgt 1446648..1447448 (-) 801 WP_374707287.1 prolipoprotein diacylglyceryl transferase -
  ACMCNG_RS06440 (THUN1654_12370) rppH 1447580..1448164 (-) 585 WP_226691631.1 RNA pyrophosphohydrolase -
  ACMCNG_RS06445 (THUN1654_12380) ampD 1448681..1449244 (-) 564 WP_226691632.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  ACMCNG_RS06450 (THUN1654_12390) pilA 1449360..1449797 (+) 438 WP_226691633.1 prepilin peptidase-dependent pilin Machinery gene
  ACMCNG_RS06455 (THUN1654_12400) pilB 1449794..1451173 (+) 1380 WP_226691634.1 GspE/PulE family protein Machinery gene
  ACMCNG_RS06460 (THUN1654_12410) pilC 1451175..1452395 (+) 1221 WP_226691635.1 type II secretion system F family protein Machinery gene
  ACMCNG_RS06465 (THUN1654_12420) pilD 1452392..1453093 (+) 702 WP_226691636.1 prepilin peptidase Machinery gene
  ACMCNG_RS06470 (THUN1654_12430) coaE 1453093..1453713 (+) 621 WP_226692923.1 dephospho-CoA kinase -
  ACMCNG_RS06475 (THUN1654_12440) yacG 1453706..1453912 (+) 207 WP_226691637.1 DNA gyrase inhibitor YacG -
  ACMCNG_RS06480 (THUN1654_12450) - 1453909..1454190 (+) 282 WP_226691638.1 GNAT family N-acetyltransferase -
  ACMCNG_RS06485 (THUN1654_12460) - 1454289..1455605 (-) 1317 WP_226691639.1 NCS2 family permease -
  ACMCNG_RS06490 (THUN1654_12470) - 1455880..1456410 (+) 531 WP_005695476.1 inorganic diphosphatase -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 46163.36 Da        Isoelectric Point: 9.8391

>NTDB_id=111181 ACMCNG_RS06460 WP_226691635.1 1451175..1452395(+) (pilC) [Rodentibacter sp. THUN1654]
MAKKCFHYQAQNALKQIQKGVIIADSHQQAQFQLMNRGLTNIKLQQNWQLNTKPKNTEISTVLNQLATLLQAAIPLKNSL
QILQQNCTQIALNTWLEQLLRSIESGYSFSQSIEQQGKYLTQQEIQLIQVGEMTGKLAIVCNKIAAHRCQSLALQRKLQK
IMLYPSMVLGISLLLTISLLIFIVPQFAEMYQSNNADLPVLTNVLLVMSNFLKNDIGKLALTLLIFWLLYYFKLKHSPMF
QQQKTRIIRATPIFGNIQQLSRLVNFSQSLYIMLQAGIPLNQALNSFLPHTQSWQTKKSIVSDQILDTEVRSILQWVSQG
YSFSDSVSSNLFPMEAQQMLQIGEKSGKLALMLQHIAENYQEKLNHQIDLLSQMLEPLMMVVIGSLIGIIMMGMYLPIFN
MGSVVQ

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=111181 ACMCNG_RS06460 WP_226691635.1 1451175..1452395(+) (pilC) [Rodentibacter sp. THUN1654]
ATGGCAAAAAAATGCTTTCATTACCAAGCACAAAACGCCTTAAAACAAATACAAAAAGGCGTGATTATCGCCGATTCTCA
TCAACAAGCCCAATTCCAATTAATGAATCGGGGACTTACCAATATCAAACTGCAACAAAATTGGCAACTCAATACTAAGC
CAAAAAATACCGAAATCAGTACGGTATTGAACCAACTTGCAACCTTGCTACAAGCCGCGATTCCACTCAAAAACAGTTTA
CAAATCTTACAACAAAACTGTACTCAGATTGCCCTAAACACTTGGCTTGAACAACTTTTGAGAAGCATTGAATCCGGCTA
TTCTTTTTCTCAAAGTATCGAGCAACAGGGAAAATATCTTACACAGCAAGAAATTCAGCTAATTCAAGTGGGTGAAATGA
CAGGTAAATTAGCCATTGTTTGTAACAAAATTGCGGCACATCGCTGCCAATCTTTAGCACTACAACGTAAATTACAGAAA
ATTATGCTTTATCCCTCAATGGTATTAGGTATTTCTCTCTTGCTCACTATTTCCTTACTAATTTTTATCGTGCCGCAATT
TGCCGAAATGTATCAGAGCAACAATGCGGATTTGCCCGTATTAACGAATGTATTACTTGTGATGTCTAATTTTCTTAAAA
ATGATATAGGAAAGTTAGCCTTAACGCTCCTCATATTTTGGTTGCTTTATTATTTCAAACTGAAACATTCTCCCATGTTT
CAACAACAAAAAACACGAATTATTAGGGCAACACCTATTTTCGGCAATATCCAACAACTTTCCCGTTTAGTGAATTTCAG
CCAAAGTCTGTACATTATGTTGCAAGCGGGAATCCCTCTCAACCAAGCCTTAAATAGTTTTTTACCGCACACACAAAGTT
GGCAAACGAAAAAAAGCATAGTGAGTGATCAAATTCTCGATACTGAAGTGCGGTCAATTTTACAATGGGTTTCACAGGGT
TATTCATTTTCAGATAGCGTAAGCAGTAATCTATTCCCGATGGAAGCACAGCAAATGCTACAAATTGGTGAGAAAAGCGG
AAAACTTGCTTTAATGTTGCAACATATTGCAGAAAACTATCAAGAAAAGCTTAATCATCAAATTGATTTATTATCACAAA
TGCTGGAACCACTAATGATGGTCGTTATCGGAAGCCTAATCGGTATCATTATGATGGGTATGTATTTACCGATTTTTAAT
ATGGGATCGGTGGTGCAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(266-397)

Type II secretion system (T2SS), protein F (T2SSF)

(63-185)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

78.818

100

0.788
  pilC Haemophilus influenzae 86-028NP

78.079

100

0.781
  pilC Glaesserella parasuis strain SC1401

38.404

98.768

0.379

Multiple sequence alignment