Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ACMCNG_RS06465 Genome accession   NZ_AP038785
Coordinates   1452392..1453093 (+) Length   233 a.a.
NCBI ID   WP_226691636.1    Uniprot ID   -
Organism   Rodentibacter sp. THUN1654     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1447392..1458093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMCNG_RS06440 (THUN1654_12370) rppH 1447580..1448164 (-) 585 WP_226691631.1 RNA pyrophosphohydrolase -
  ACMCNG_RS06445 (THUN1654_12380) ampD 1448681..1449244 (-) 564 WP_226691632.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  ACMCNG_RS06450 (THUN1654_12390) pilA 1449360..1449797 (+) 438 WP_226691633.1 prepilin peptidase-dependent pilin Machinery gene
  ACMCNG_RS06455 (THUN1654_12400) pilB 1449794..1451173 (+) 1380 WP_226691634.1 GspE/PulE family protein Machinery gene
  ACMCNG_RS06460 (THUN1654_12410) pilC 1451175..1452395 (+) 1221 WP_226691635.1 type II secretion system F family protein Machinery gene
  ACMCNG_RS06465 (THUN1654_12420) pilD 1452392..1453093 (+) 702 WP_226691636.1 prepilin peptidase Machinery gene
  ACMCNG_RS06470 (THUN1654_12430) coaE 1453093..1453713 (+) 621 WP_226692923.1 dephospho-CoA kinase -
  ACMCNG_RS06475 (THUN1654_12440) yacG 1453706..1453912 (+) 207 WP_226691637.1 DNA gyrase inhibitor YacG -
  ACMCNG_RS06480 (THUN1654_12450) - 1453909..1454190 (+) 282 WP_226691638.1 GNAT family N-acetyltransferase -
  ACMCNG_RS06485 (THUN1654_12460) - 1454289..1455605 (-) 1317 WP_226691639.1 NCS2 family permease -
  ACMCNG_RS06490 (THUN1654_12470) - 1455880..1456410 (+) 531 WP_005695476.1 inorganic diphosphatase -
  ACMCNG_RS06495 (THUN1654_12480) galE 1456582..1457598 (+) 1017 WP_226691640.1 UDP-glucose 4-epimerase GalE -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26646.85 Da        Isoelectric Point: 8.4283

>NTDB_id=111182 ACMCNG_RS06465 WP_226691636.1 1452392..1453093(+) (pilD) [Rodentibacter sp. THUN1654]
MILFASFWLGGIFGVALWLYISGFITRLQNDIYNNYIELFPQNLPSFQPHFAEVQQKKSGHILGYFLITGLILTLITAIT
ENPLFALWLGCTIILLWAIAYLDWQYQLISPTPCLWLLALGLFGATQSLSPLTLIQSLQSAVIFFVVFYGIYQLAKWYYQ
KEAFGRGDYWLALGIGSYLPTEHLPLFLLIACALGILFAILFKRKERFLPFAPFLCVSILVVFTINLTMLYKK

Nucleotide


Download         Length: 702 bp        

>NTDB_id=111182 ACMCNG_RS06465 WP_226691636.1 1452392..1453093(+) (pilD) [Rodentibacter sp. THUN1654]
ATGATCCTATTTGCTTCCTTTTGGTTAGGTGGGATTTTCGGTGTAGCCTTATGGCTTTACATTTCGGGCTTTATCACAAG
ATTACAAAACGATATTTACAATAATTACATCGAACTATTTCCTCAAAATCTTCCCTCATTTCAACCGCACTTTGCGGAAG
TTCAACAAAAAAAGAGCGGTCATATTTTAGGCTATTTTCTTATCACAGGATTAATACTCACCCTAATAACCGCAATAACC
GAAAATCCTCTTTTCGCTTTATGGCTTGGTTGCACCATTATTCTATTGTGGGCGATTGCCTACCTTGATTGGCAGTATCA
ACTCATTTCCCCCACTCCTTGTTTATGGTTACTTGCTCTTGGTTTATTCGGTGCAACACAATCTTTATCTCCTTTAACCC
TAATACAAAGTCTACAAAGTGCGGTCATTTTTTTCGTTGTTTTTTATGGCATTTATCAACTTGCCAAATGGTACTACCAA
AAAGAAGCCTTCGGACGAGGGGATTATTGGTTAGCTCTTGGTATCGGCAGTTACTTACCGACAGAGCATCTTCCTCTATT
TCTTTTGATTGCCTGCGCATTAGGTATTTTATTTGCAATTCTTTTCAAAAGAAAAGAGCGTTTTTTACCCTTCGCACCTT
TTTTGTGTGTCTCGATTCTTGTAGTATTTACAATCAATTTAACAATGCTTTATAAGAAATGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(93-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae Rd KW20

57.522

96.996

0.558
  pilD Haemophilus influenzae 86-028NP

56.637

96.996

0.549

Multiple sequence alignment