Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   HMPREF9425_RS00890 Genome accession   NZ_GL831112
Coordinates   163119..165089 (+) Length   656 a.a.
NCBI ID   WP_003092023.1    Uniprot ID   -
Organism   Streptococcus vestibularis ATCC 49124     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 158119..170089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9425_RS00860 (HMPREF9425_0176) radA 158313..159674 (+) 1362 WP_081448730.1 DNA repair protein RadA Machinery gene
  HMPREF9425_RS00865 (HMPREF9425_0177) - 159762..160457 (+) 696 WP_003095947.1 TIGR00266 family protein -
  HMPREF9425_RS00870 (HMPREF9425_0178) - 160608..161105 (+) 498 WP_003092048.1 beta-class carbonic anhydrase -
  HMPREF9425_RS00875 (HMPREF9425_0179) - 161199..161552 (-) 354 WP_003095949.1 DUF3397 domain-containing protein -
  HMPREF9425_RS00880 (HMPREF9425_0180) rplK 161724..162149 (+) 426 WP_002885648.1 50S ribosomal protein L11 -
  HMPREF9425_RS00885 (HMPREF9425_0181) rplA 162249..162938 (+) 690 WP_037621255.1 50S ribosomal protein L1 -
  HMPREF9425_RS00890 (HMPREF9425_0182) amiA 163119..165089 (+) 1971 WP_003092023.1 peptide ABC transporter substrate-binding protein Regulator
  HMPREF9425_RS00895 (HMPREF9425_0183) gltX 165271..166725 (+) 1455 WP_003095953.1 glutamate--tRNA ligase -
  HMPREF9425_RS09165 - 167321..168071 (-) 751 Protein_179 IS30 family transposase -
  HMPREF9425_RS00905 (HMPREF9425_0186) - 168688..169887 (+) 1200 WP_037621258.1 argininosuccinate synthase -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72995.00 Da        Isoelectric Point: 5.2528

>NTDB_id=1111727 HMPREF9425_RS00890 WP_003092023.1 163119..165089(+) (amiA) [Streptococcus vestibularis ATCC 49124]
MKKSKVFLLVAVGLLSVGVLTACSSSSKTSGKTYNYVYGGDPATLDYVSTNKKNMTTAVSNGVDGLFENDQYGNLKPSVA
ENWSVSQDGLTYTYKIRKGVKWYTSDGEEYANVTAKDFVTGLKHAADTNSEAIYLLQNSVKGLNDYLSGANKDFSNVGIK
AVDDYTLQYTLSQPEPYWNSKLTYSVTWPVNAGFLKSKGKDFGKSTDPTSILYNGPYLLKALTTKSSIEFTKNENYWDKD
NVYFDNIKLTYDDGSDQESLERKFTDGVYTLARLFPNSSNYSKVSKKYKDNIYTTQPAASVEGVGINIDRQTYNNTSKEN
DQQKSSTKAALLNKDFRQSLGFAIDRTNYAAQLNGKESANTAVRNIFVKPDFVQADGKDFGTMVMDQLPAYGDEWSGVNL
ADSQDGLYNPEKAKAEFAKAKEALQAEGVQFPIHLDVPVNQTSKIFVNQVQSLKQSIEATLGKENVVIDIHQLSADDFYN
ITYYASNAAAEDWDLSVGVAWEPDYLDPSTYLDVLKTTSSENTKSFMGYDNPNSQAVEKVGLKEYDQLVEDASKETTDLT
RRYEKYAKAQAWLTDSALYLPTTAYSGAATVVSRIQPFSGAYAQAGDKGSTYYFKYIKSQDDIVTKKQYDSAYKDWLKEK
AKSNDKAQKDLAKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=1111727 HMPREF9425_RS00890 WP_003092023.1 163119..165089(+) (amiA) [Streptococcus vestibularis ATCC 49124]
ATGAAAAAGAGTAAGGTATTTTTACTGGTAGCCGTAGGCCTGTTATCTGTAGGTGTATTAACGGCTTGCTCGTCATCAAG
TAAGACGTCTGGGAAGACTTATAATTATGTTTACGGTGGCGATCCTGCAACCCTAGACTATGTTTCTACAAATAAGAAAA
ATATGACAACAGCCGTTAGTAATGGTGTTGATGGTTTGTTTGAAAATGACCAATACGGGAATCTAAAACCTTCTGTCGCT
GAAAACTGGTCTGTTTCTCAAGATGGTTTGACTTATACTTACAAGATTCGTAAGGGTGTCAAATGGTACACTTCAGACGG
CGAAGAATATGCCAATGTAACAGCTAAAGACTTTGTAACAGGTCTTAAGCATGCTGCTGATACTAATTCTGAAGCGATTT
ATTTGCTACAAAACTCAGTTAAGGGCTTGAATGATTACCTTTCAGGTGCAAACAAGGACTTCTCAAATGTAGGTATCAAA
GCAGTTGATGATTACACTTTGCAATATACGCTTAGTCAACCAGAACCTTACTGGAACTCAAAATTGACTTACTCTGTCAC
TTGGCCTGTTAACGCAGGATTTTTGAAATCTAAAGGAAAAGATTTTGGTAAGTCAACGGATCCAACGTCTATTCTTTATA
ACGGACCATACCTTCTTAAAGCTTTGACAACTAAATCGTCTATTGAGTTCACCAAGAATGAAAATTATTGGGATAAGGAT
AATGTCTACTTTGACAATATCAAATTAACTTATGATGATGGATCAGATCAAGAGTCTTTGGAACGTAAGTTCACTGATGG
TGTCTACACATTAGCTCGCCTCTTCCCTAATAGCTCAAATTATTCTAAGGTTTCTAAAAAGTATAAAGATAATATCTATA
CTACTCAACCAGCAGCATCAGTAGAGGGGGTTGGTATTAATATTGATCGCCAAACTTACAATAATACCTCTAAAGAAAAT
GACCAACAGAAATCATCAACTAAAGCAGCACTTCTTAATAAGGATTTCCGTCAATCATTAGGATTTGCCATTGATCGTAC
AAATTATGCGGCTCAGTTGAATGGTAAAGAAAGTGCTAATACAGCTGTTCGTAATATCTTTGTTAAACCAGACTTTGTTC
AGGCAGATGGTAAAGATTTCGGAACAATGGTAATGGATCAACTTCCAGCTTATGGTGATGAGTGGTCTGGTGTGAATCTT
GCAGATAGTCAGGATGGTCTTTACAATCCAGAAAAAGCTAAGGCTGAGTTCGCGAAAGCTAAGGAAGCTCTTCAAGCAGA
AGGAGTTCAGTTCCCAATTCATTTGGACGTTCCAGTAAACCAAACAAGTAAAATTTTTGTGAATCAAGTGCAATCTCTCA
AACAGTCTATTGAAGCTACACTTGGAAAAGAGAATGTTGTAATTGATATCCATCAATTGTCAGCTGACGATTTCTACAAT
ATTACTTACTATGCTTCGAATGCAGCAGCAGAGGATTGGGACTTGTCGGTTGGTGTTGCTTGGGAGCCTGATTACCTCGA
TCCATCTACATATCTTGATGTTTTGAAAACGACTAGTAGCGAAAACACCAAGTCCTTTATGGGTTACGACAATCCAAATA
GTCAAGCTGTGGAAAAAGTAGGTCTTAAAGAATATGACCAATTAGTTGAAGATGCTTCTAAGGAAACTACAGATTTGACA
CGTCGTTATGAAAAATATGCTAAAGCTCAAGCATGGTTGACAGATAGTGCCCTCTATCTTCCAACTACCGCTTATAGTGG
TGCGGCAACGGTAGTTTCTCGCATCCAGCCATTCTCAGGAGCTTACGCTCAAGCTGGTGATAAAGGTTCTACTTACTACT
TCAAGTATATTAAATCTCAAGATGATATTGTAACTAAGAAACAATATGATTCAGCTTATAAAGATTGGCTTAAAGAGAAA
GCAAAATCTAATGACAAAGCTCAAAAAGATCTTGCAAAACACGTTAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

68.902

100

0.689
  amiA3 Streptococcus thermophilus LMD-9

68.037

100

0.681
  amiA3 Streptococcus thermophilus LMG 18311

67.58

100

0.677

Multiple sequence alignment