Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HMPREF9425_RS00860 Genome accession   NZ_GL831112
Coordinates   158313..159674 (+) Length   453 a.a.
NCBI ID   WP_081448730.1    Uniprot ID   -
Organism   Streptococcus vestibularis ATCC 49124     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 153313..164674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9425_RS00835 (HMPREF9425_0171) - 154126..154686 (-) 561 WP_003095933.1 MptD family putative ECF transporter S component -
  HMPREF9425_RS00840 (HMPREF9425_0172) - 154695..155486 (-) 792 WP_037621251.1 formate/nitrite transporter family protein -
  HMPREF9425_RS00845 (HMPREF9425_0173) - 155602..156852 (-) 1251 WP_003095937.1 NAD(P)H-dependent oxidoreductase -
  HMPREF9425_RS00850 (HMPREF9425_0174) - 156871..157473 (-) 603 WP_037621253.1 NADPH-dependent FMN reductase -
  HMPREF9425_RS00855 (HMPREF9425_0175) - 157688..158134 (+) 447 WP_003095942.1 dUTP diphosphatase -
  HMPREF9425_RS00860 (HMPREF9425_0176) radA 158313..159674 (+) 1362 WP_081448730.1 DNA repair protein RadA Machinery gene
  HMPREF9425_RS00865 (HMPREF9425_0177) - 159762..160457 (+) 696 WP_003095947.1 TIGR00266 family protein -
  HMPREF9425_RS00870 (HMPREF9425_0178) - 160608..161105 (+) 498 WP_003092048.1 beta-class carbonic anhydrase -
  HMPREF9425_RS00875 (HMPREF9425_0179) - 161199..161552 (-) 354 WP_003095949.1 DUF3397 domain-containing protein -
  HMPREF9425_RS00880 (HMPREF9425_0180) rplK 161724..162149 (+) 426 WP_002885648.1 50S ribosomal protein L11 -
  HMPREF9425_RS00885 (HMPREF9425_0181) rplA 162249..162938 (+) 690 WP_037621255.1 50S ribosomal protein L1 -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49479.86 Da        Isoelectric Point: 6.6528

>NTDB_id=1111726 HMPREF9425_RS00860 WP_081448730.1 158313..159674(+) (radA) [Streptococcus vestibularis ATCC 49124]
MAKKKSTFVCRECGYNSPKYLGRCPNCSSWSSFEEEVEVQEVKNARVSLTGEKSKPTKLKEVSSINYARIKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAVRSQVE
AIKPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQIAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAISSSYKELPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNSLHGMKIPEGIQVIGVTTVGEVLKKVFS

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1111726 HMPREF9425_RS00860 WP_081448730.1 158313..159674(+) (radA) [Streptococcus vestibularis ATCC 49124]
ATAGCTAAGAAAAAATCAACTTTTGTTTGTAGAGAATGTGGCTACAATTCACCCAAATATCTAGGACGCTGTCCCAATTG
TTCTTCTTGGTCCTCTTTTGAGGAAGAAGTTGAGGTGCAGGAGGTTAAAAATGCCCGTGTCAGTTTGACGGGTGAAAAGT
CCAAACCTACTAAGTTAAAAGAAGTCTCTTCAATTAACTACGCCCGCATAAAAACTGATATGGACGAGTTTAACCGTGTT
TTAGGTGGCGGTGTGGTTCCGGGGAGTTTGGTCCTTATTGGAGGAGATCCAGGAATAGGGAAATCCACCCTTCTCTTACA
AGTGTCAACACAGCTGGCTAACAAGGGAACGGTCCTCTATGTTTCTGGGGAAGAATCGGCCGAGCAAATCAAATTGCGGA
GTGAACGTTTAGGTGATATTGATAACGAATTTTATCTGTATGCTGAGACCAATATGCAAGCCGTCCGTAGCCAAGTCGAG
GCTATCAAACCCGATTTCCTTATTATCGACTCAATTCAGACCATCATGAGCCCAGAGATTTCTGGCGTTCAAGGATCTGT
TTCCCAGGTTCGTGAAGTAACTGCCGAACTCATGCAGATTGCCAAAACCAATAACATTGCCACTTTTATTGTTGGGCATG
TGACCAAGGAGGGACAGCTGGCTGGACCACGTATGTTGGAGCACATGGTGGATACGGTGCTCTATTTTGAGGGGGAACGT
CATCATACCTTCCGTATTCTGCGAGCAGTTAAAAACCGTTTTGGTTCAACCAATGAAATTGGGATTTTTGAAATGCAGTC
AGGTGGTCTGGTCGAGGTACTAAACCCTAGCCAAGTTTTCTTAGAAGAACGCCTAGACGGTGCCACAGGTTCTGCCATTG
TTGTCACAATGGAGGGGAGTCGACCTATCCTAGCTGAGGTTCAAGCTTTGGTGACACCGACCGTCTTTGGTAATGCAAAG
CGGACAACGACGGGACTGGACTTTAACCGTGTCAGCCTTATCATGGCTGTCTTAGAGAAACGTTGCGGCCTTCTTCTCCA
AAATCAAGATGCCTATCTCAAATCAGCTGGTGGTGTCAAGTTGGACGAGCCAGCTATTGACCTTGCAGTTGCTGTTGCTA
TCTCCTCTAGTTACAAGGAGCTTCCAACCAATCCACAAGAAGCCTTTATAGGAGAAATTGGCTTGACCGGAGAGATTCGT
CGTGTGACTCGTATTGAGCAGCGTATCAATGAAGCCGCTAAACTAGGTTTTACTAAGATTTATGCTCCTAAAAATTCGCT
TCATGGCATGAAGATTCCAGAAGGTATACAGGTCATTGGGGTCACGACGGTAGGAGAAGTACTCAAAAAAGTTTTTTCTT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(63-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.742

100

0.887
  radA Streptococcus pneumoniae D39

88.742

100

0.887
  radA Streptococcus pneumoniae R6

88.742

100

0.887
  radA Streptococcus pneumoniae TIGR4

88.742

100

0.887
  radA Streptococcus mitis NCTC 12261

88.742

100

0.887
  radA Streptococcus mitis SK321

88.742

100

0.887
  radA Bacillus subtilis subsp. subtilis str. 168

61.369

100

0.614

Multiple sequence alignment