Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   XDD1_RS01570 Genome accession   NZ_FO704550
Coordinates   301420..302964 (-) Length   514 a.a.
NCBI ID   WP_045968097.1    Uniprot ID   A0A068QN96
Organism   Xenorhabdus doucetiae strain FRM16     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 296420..307964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XDD1_RS01560 (XDD1_0326) hdfR 300050..300901 (-) 852 WP_045968093.1 HTH-type transcriptional regulator HdfR -
  XDD1_RS01565 (XDD1_0327) - 301018..301356 (+) 339 WP_045968095.1 DUF413 domain-containing protein -
  XDD1_RS01570 (XDD1_0328) comM 301420..302964 (-) 1545 WP_045968097.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  XDD1_RS19310 - 303345..303440 (+) 96 WP_148886013.1 IlvGEDA operon leader peptide -
  XDD1_RS01575 (XDD1_0329) ilvG 303570..305216 (+) 1647 WP_045968099.1 acetolactate synthase 2 catalytic subunit -
  XDD1_RS01580 (XDD1_0330) ilvM 305213..305470 (+) 258 WP_045968101.1 acetolactate synthase 2 small subunit -
  XDD1_RS01585 (XDD1_0331) - 305495..306421 (+) 927 WP_045968103.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 56191.91 Da        Isoelectric Point: 8.7869

>NTDB_id=1111571 XDD1_RS01570 WP_045968097.1 301420..302964(-) (comM) [Xenorhabdus doucetiae strain FRM16]
MTLAVIHTRATIGIDSPIVTIEAHISNGLPGLTLVGLPETTVKEARDRVRSALINSGFTYPPKRITVNLAPADLPKEGGR
YDLPIAIAILAASEQISADKLHNYEFLGELALSGEIRRVMGAIPAALSAKRAKRQLILSSENQAELAILSQNETLMANHL
LQVCHFLQGEQEERGEKVTLSSPPPVELQTESFALDIQDIIGQEQAKRALEITAAGGHNLLLLGPPGTGKTMLASRLCSL
LPPLTHQEALDVAAINSLSGHLVNPQKWHTRPFRAPHHSSSMAALVGGGSIPKPGEISLAHHGVLFLDELPEFNRSVLDA
LREPLESGEIVISRARAKVRFPAQVQLIAAMNPSPTGYHQGMHNRSSPHQVLRYLSKLSGPFLDRFDLSIEVPLLPPGIL
SQSSTKHGESSQEVKKRVAIARKIQIERCGHINAHLGSKQTEDICKISMENAVFLENTLLKLGLSIRAWHRILRVSRTIA
DLKEQKSIEKPDIMEALSYRSMDRLLIQLQKQVG

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=1111571 XDD1_RS01570 WP_045968097.1 301420..302964(-) (comM) [Xenorhabdus doucetiae strain FRM16]
ATGACACTTGCCGTCATCCATACACGGGCAACGATTGGTATTGATTCCCCTATCGTCACGATAGAAGCACATATCAGTAA
TGGCTTACCCGGTCTTACCCTTGTCGGTTTACCTGAAACTACCGTAAAGGAAGCCAGAGATCGGGTCAGAAGTGCTTTGA
TCAACAGTGGTTTTACTTATCCTCCTAAAAGGATCACCGTTAATTTAGCGCCTGCGGATCTGCCCAAAGAAGGGGGAAGA
TATGATTTACCCATCGCTATCGCAATTTTGGCCGCATCGGAGCAGATCTCAGCAGATAAGCTACATAATTATGAGTTTTT
GGGTGAATTAGCGCTCTCAGGTGAAATACGGCGAGTCATGGGAGCCATTCCCGCTGCATTGAGCGCAAAAAGGGCAAAAA
GGCAACTTATCCTCTCCTCTGAGAATCAAGCCGAACTGGCAATTTTGTCTCAGAATGAAACACTAATGGCAAATCACTTG
CTCCAAGTCTGCCATTTTTTACAGGGAGAACAGGAAGAACGAGGAGAAAAAGTCACTCTATCCTCCCCTCCTCCTGTTGA
ACTACAAACAGAATCCTTTGCTTTGGATATACAAGATATTATTGGTCAGGAGCAAGCCAAACGCGCACTGGAAATTACCG
CCGCTGGTGGACATAATCTCCTGTTACTCGGCCCCCCAGGCACCGGTAAAACCATGCTTGCCAGTCGGTTATGTAGTTTG
TTACCCCCATTGACGCATCAGGAAGCTCTGGACGTCGCTGCAATCAATAGCTTATCCGGACATCTAGTTAATCCTCAAAA
ATGGCATACACGCCCATTTAGAGCCCCTCATCATAGTTCTTCAATGGCAGCGCTTGTTGGAGGAGGTTCAATACCTAAAC
CGGGAGAAATTTCTCTTGCCCATCATGGCGTGTTATTTTTAGACGAATTACCCGAATTTAATCGTAGTGTCCTTGACGCC
CTGCGTGAACCGTTGGAATCCGGCGAAATCGTGATATCCCGTGCCAGGGCAAAAGTCCGTTTTCCAGCTCAGGTTCAACT
GATTGCTGCCATGAATCCTAGCCCAACCGGCTATCATCAAGGGATGCATAATCGAAGTAGTCCACACCAAGTATTACGCT
ACCTTTCCAAACTTTCAGGCCCTTTTTTAGATCGTTTTGATCTTTCCATTGAAGTACCCCTGCTTCCACCAGGCATTTTA
AGTCAATCATCAACAAAACATGGCGAAAGTAGTCAGGAAGTCAAAAAACGCGTAGCAATAGCAAGAAAAATACAAATAGA
ACGGTGTGGACATATCAATGCTCATCTCGGTAGCAAACAGACCGAAGATATTTGCAAAATTAGCATGGAAAATGCCGTTT
TTCTGGAAAATACTTTATTGAAATTAGGACTATCTATACGTGCTTGGCACAGAATACTTAGGGTTTCCCGCACAATTGCC
GACTTAAAAGAACAAAAAAGTATAGAAAAACCGGATATTATGGAAGCATTGAGCTACCGAAGTATGGATAGGTTACTTAT
CCAATTACAAAAACAGGTTGGATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(408-500)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(196-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A068QN96

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.853

100

0.611
  comM Vibrio cholerae strain A1552

60.971

100

0.611
  comM Glaesserella parasuis strain SC1401

60.971

100

0.611
  comM Vibrio campbellii strain DS40M4

59.375

99.611

0.591
  comM Legionella pneumophila str. Paris

50.298

97.86

0.492
  comM Legionella pneumophila strain ERS1305867

50.298

97.86

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.99

99.027

0.446

Multiple sequence alignment