Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA/cilB/dalA   Type   Machinery gene
Locus tag   ACN076_RS05205 Genome accession   NZ_CP184836
Coordinates   1072101..1072949 (+) Length   282 a.a.
NCBI ID   WP_420789541.1    Uniprot ID   -
Organism   Streptococcus sp. K0074     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 1067101..1077949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN076_RS05180 (ACN076_05180) - 1067824..1068531 (+) 708 WP_000638495.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ACN076_RS05185 (ACN076_05185) - 1068536..1069558 (+) 1023 WP_203176496.1 ribitol-5-phosphate dehydrogenase -
  ACN076_RS05190 (ACN076_05190) - 1069575..1070444 (+) 870 WP_261029786.1 phosphotransferase family protein -
  ACN076_RS05195 (ACN076_05195) - 1070434..1071312 (+) 879 WP_004269680.1 DMT family transporter -
  ACN076_RS05200 (ACN076_05200) - 1071324..1072013 (+) 690 WP_000643974.1 sugar phosphate nucleotidyltransferase -
  ACN076_RS05205 (ACN076_05205) dprA/cilB/dalA 1072101..1072949 (+) 849 WP_420789541.1 DNA-processing protein DprA Machinery gene
  ACN076_RS05210 (ACN076_05210) topA 1073219..1075306 (+) 2088 WP_420789542.1 type I DNA topoisomerase -
  ACN076_RS05215 (ACN076_05215) - 1075454..1076710 (+) 1257 WP_420789543.1 ISL3 family transposase -
  ACN076_RS05220 (ACN076_05220) - 1076833..1077192 (+) 360 WP_001220352.1 YbaN family protein -
  ACN076_RS05225 (ACN076_05225) - 1077286..1077918 (+) 633 WP_420789544.1 copper homeostasis protein CutC -

Sequence


Protein


Download         Length: 282 a.a.        Molecular weight: 31136.72 Da        Isoelectric Point: 5.0589

>NTDB_id=1111455 ACN076_RS05205 WP_420789541.1 1072101..1072949(+) (dprA/cilB/dalA) [Streptococcus sp. K0074]
MKITNYEIYKLKKSGLTNQQILNVLEYGENVDQELLLGDIAEISGCRNPAVFMERYFQIDDTHLEKEFQKFPSFSILDDC
YPWDLSEIYDAPVLLFYKGNLDLLKFPKVAVVGSRSCSKQGAKSVEKVIQGLENELVIVSGLAKGIDTAAHMAALQNGGK
TIAVIGTGLDVFYPKANKRLQDYIGNDHLVLSEYGPGEQPLKFHFPARNRIIAGLCRGVIVAEAKMRSGSLISCERAMEE
GRDVFAIPGSILDGLSDGCHHLIQEGAKLVTSGQDVLAEFEF

Nucleotide


Download         Length: 849 bp        

>NTDB_id=1111455 ACN076_RS05205 WP_420789541.1 1072101..1072949(+) (dprA/cilB/dalA) [Streptococcus sp. K0074]
ATGAAAATCACAAACTATGAAATCTATAAGTTGAAAAAATCAGGTTTGACCAATCAACAGATTTTGAATGTCCTAGAATA
CGGTGAAAATGTCGATCAGGAACTTTTATTGGGTGACATTGCAGAAATTTCAGGTTGCCGAAATCCAGCTGTTTTTATGG
AACGTTATTTTCAGATAGACGATACGCATTTGGAGAAGGAGTTTCAAAAATTTCCATCTTTCTCTATTTTAGATGACTGT
TATCCTTGGGATTTGAGTGAAATATACGATGCTCCTGTGCTTTTATTTTACAAGGGAAATCTTGACCTCTTGAAATTTCC
TAAGGTAGCGGTCGTGGGGAGTCGTTCTTGCAGCAAACAGGGAGCTAAGTCAGTTGAAAAAGTCATTCAGGGCTTGGAAA
ATGAACTGGTTATCGTCAGTGGATTAGCCAAGGGCATTGACACAGCAGCTCATATGGCAGCTCTTCAAAATGGCGGAAAA
ACCATTGCAGTGATTGGAACAGGACTGGATGTGTTTTATCCTAAAGCCAATAAACGCTTGCAAGACTACATCGGTAATGA
CCATCTGGTTCTTAGTGAATATGGACCTGGCGAACAACCTCTGAAATTTCATTTTCCTGCCCGTAATCGCATCATTGCTG
GACTTTGTCGAGGTGTGATTGTTGCAGAGGCTAAGATGCGCTCAGGTAGCCTTATTAGCTGTGAGCGAGCAATGGAAGAA
GGGCGCGATGTTTTTGCTATTCCTGGTAGCATTTTAGATGGACTATCAGACGGTTGCCATCATTTGATTCAAGAAGGGGC
AAAATTGGTTACAAGTGGGCAAGATGTTCTTGCGGAATTTGAATTTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

98.227

100

0.982

  dprA/cilB/dalA Streptococcus pneumoniae Rx1

97.872

100

0.979

  dprA/cilB/dalA Streptococcus pneumoniae D39

97.872

100

0.979

  dprA/cilB/dalA Streptococcus pneumoniae R6

97.872

100

0.979

  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

97.872

100

0.979

  dprA/cilB/dalA Streptococcus mitis SK321

97.163

100

0.972

  dprA Streptococcus mutans UA159

63.214

99.291

0.628

  dprA Lactococcus lactis subsp. cremoris KW2

55

99.291

0.546


Multiple sequence alignment