Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   ACN076_RS01170 Genome accession   NZ_CP184836
Coordinates   207655..207891 (-) Length   78 a.a.
NCBI ID   WP_153193739.1    Uniprot ID   -
Organism   Streptococcus sp. K0074     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 202655..212891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN076_RS01140 (ACN076_01140) radA 202949..204310 (-) 1362 WP_077804517.1 DNA repair protein RadA Machinery gene
  ACN076_RS01145 (ACN076_01145) - 204324..204881 (-) 558 WP_186821212.1 histidine phosphatase family protein -
  ACN076_RS01150 (ACN076_01150) - 204841..205284 (-) 444 WP_153193745.1 dUTP diphosphatase -
  ACN076_RS01160 (ACN076_01160) tadA 205471..205938 (-) 468 WP_153193738.1 tRNA adenosine(34) deaminase TadA -
  ACN076_RS01165 (ACN076_01165) - 206138..207424 (-) 1287 WP_153193746.1 adenylosuccinate synthase -
  ACN076_RS01170 (ACN076_01170) comW 207655..207891 (-) 237 WP_153193739.1 sigma(X)-activator ComW Regulator
  ACN076_RS01175 (ACN076_01175) - 208544..208699 (+) 156 Protein_203 transposase -

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9888.32 Da        Isoelectric Point: 5.5481

>NTDB_id=1111418 ACN076_RS01170 WP_153193739.1 207655..207891(-) (comW) [Streptococcus sp. K0074]
MLQNIYDQMTDFYDSIEEEYATFFGNSWDWEHFHFKFLIYYLVRYDIGCRRDFIVYHYRVAYRLYLEKMIMKQGFISC

Nucleotide


Download         Length: 237 bp        

>NTDB_id=1111418 ACN076_RS01170 WP_153193739.1 207655..207891(-) (comW) [Streptococcus sp. K0074]
ATGCTACAAAATATTTATGATCAGATGACTGATTTCTATGACAGTATCGAAGAAGAGTATGCTACTTTCTTTGGTAATAG
TTGGGACTGGGAACATTTTCATTTTAAATTTTTGATTTATTATTTAGTTAGATATGATATTGGGTGTCGTAGGGATTTTA
TCGTTTACCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAGATGATAATGAAACAAGGTTTTATTTCTTGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus pneumoniae Rx1

78.205

100

0.782
  comW Streptococcus pneumoniae D39

78.205

100

0.782
  comW Streptococcus pneumoniae R6

78.205

100

0.782
  comW Streptococcus pneumoniae TIGR4

78.205

100

0.782
  comW Streptococcus mitis SK321

76.923

100

0.769
  comW Streptococcus mitis NCTC 12261

76.623

98.718

0.756

Multiple sequence alignment