Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACN076_RS01140 Genome accession   NZ_CP184836
Coordinates   202949..204310 (-) Length   453 a.a.
NCBI ID   WP_077804517.1    Uniprot ID   A0A2N6PNQ5
Organism   Streptococcus sp. K0074     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 197949..209310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN076_RS01115 (ACN076_01115) - 198169..199053 (-) 885 WP_365967121.1 N-acetylmuramoyl-L-alanine amidase family protein -
  ACN076_RS01120 (ACN076_01120) - 199431..200306 (-) 876 WP_420789994.1 Rpn family recombination-promoting nuclease/putative transposase -
  ACN076_RS01125 (ACN076_01125) - 200425..201393 (-) 969 WP_000010167.1 ribose-phosphate diphosphokinase -
  ACN076_RS01130 (ACN076_01130) - 201539..202354 (-) 816 WP_420789995.1 PrsW family intramembrane metalloprotease -
  ACN076_RS01135 (ACN076_01135) - 202379..202876 (-) 498 WP_004237611.1 beta-class carbonic anhydrase -
  ACN076_RS01140 (ACN076_01140) radA 202949..204310 (-) 1362 WP_077804517.1 DNA repair protein RadA Machinery gene
  ACN076_RS01145 (ACN076_01145) - 204324..204881 (-) 558 WP_186821212.1 histidine phosphatase family protein -
  ACN076_RS01150 (ACN076_01150) - 204841..205284 (-) 444 WP_153193745.1 dUTP diphosphatase -
  ACN076_RS01160 (ACN076_01160) tadA 205471..205938 (-) 468 WP_153193738.1 tRNA adenosine(34) deaminase TadA -
  ACN076_RS01165 (ACN076_01165) - 206138..207424 (-) 1287 WP_153193746.1 adenylosuccinate synthase -
  ACN076_RS01170 (ACN076_01170) comW 207655..207891 (-) 237 WP_153193739.1 sigma(X)-activator ComW Regulator
  ACN076_RS01175 (ACN076_01175) - 208544..208699 (+) 156 Protein_203 transposase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49416.91 Da        Isoelectric Point: 6.5137

>NTDB_id=1111417 ACN076_RS01140 WP_077804517.1 202949..204310(-) (radA) [Streptococcus sp. K0074]
MAKKKATFVCQNCGYNSPKYLGRCPNCGSWSSFVEEVEVAEVKNARVSLTGEKTKPMKLAEVTSINVNRTKTEMEEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEVE
RIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNAK
RTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEIR
RVNRIEQRINEAAKLGFTKIYVPKNSLTGITPPKEIQVIGVTTIQEVLKKVFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1111417 ACN076_RS01140 WP_077804517.1 202949..204310(-) (radA) [Streptococcus sp. K0074]
ATCGCAAAGAAAAAAGCGACATTTGTATGTCAAAATTGTGGCTATAATTCCCCTAAATATCTGGGGCGTTGTCCCAACTG
TGGGTCTTGGTCTTCTTTTGTAGAAGAGGTTGAGGTTGCCGAGGTCAAGAATGCGCGTGTGTCCTTGACAGGTGAGAAAA
CCAAGCCCATGAAACTGGCTGAGGTGACGTCAATCAACGTCAATCGAACCAAGACGGAGATGGAGGAATTTAACCGTGTA
CTTGGAGGCGGAGTGGTACCAGGAAGTCTCGTACTCATAGGTGGGGATCCTGGGATTGGGAAGTCAACGCTTCTCCTACA
AGTCTCAACCCAGTTGTCCCAAGTGGGGACAGTTCTCTATGTCAGTGGGGAGGAGTCTGCCCAGCAAATTAAGCTACGAG
CAGAGCGCTTGGGAGATATTGATAGCGAGTTTTATCTCTATGCAGAGACCAATATGCAGAGTGTTCGCGCAGAGGTAGAA
AGAATTCAGCCAGACTTTCTCATCATCGACTCCATTCAAACCATCATGTCTCCTGAGATTTCAGGGGTACAGGGATCTGT
TTCTCAAGTGCGTGAGGTAACCGCTGAGCTTATGCAGTTGGCTAAGACCAACAATATTGCTATTTTTATCGTAGGCCATG
TGACCAAGGAAGGAACCTTAGCTGGGCCGAGAATGTTGGAGCATATGGTGGATACAGTGCTTTACTTTGAAGGAGAGCGC
CACCATACCTTTCGTATTTTGAGAGCGGTCAAAAACCGTTTTGGCTCCACTAATGAGATTGGGATTTTTGAGATGCAGTC
AGGCGGATTGGTTGAGGTACTCAATCCGAGTCAAGTTTTCCTAGAAGAGCGTTTGGATGGGGCGACTGGTTCATCAATCG
TTGTGACCATGGAAGGGACGCGTCCGATTTTGGCGGAGGTTCAGGCTTTGGTGACACCTACCATGTTTGGAAATGCCAAG
CGTACTACGACAGGACTTGATTTTAATCGTGCTAGCTTGATTATGGCTGTTTTGGAAAAACGGGCAGGTCTTCTCTTGCA
AAATCAGGATGCTTATCTTAAATCTGCTGGCGGTGTCAAATTGGATGAACCTGCGATAGACTTGGCCGTTGCGGTTGCCA
TTGCTTCGAGCTATAAAGACAAGCCAACTAATCCTCAGGAATGTTTTGTAGGAGAACTTGGCTTGACGGGAGAGATTCGG
CGCGTGAATCGTATTGAGCAGCGCATCAATGAAGCTGCTAAACTGGGTTTTACTAAGATTTATGTACCTAAGAATTCCTT
GACAGGAATCACTCCGCCTAAGGAAATTCAGGTTATTGGAGTGACAACGATTCAGGAAGTTTTGAAAAAGGTCTTTGCAT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(63-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N6PNQ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

99.779

100

0.998
  radA Streptococcus mitis SK321

99.779

100

0.998
  radA Streptococcus pneumoniae Rx1

99.779

100

0.998
  radA Streptococcus pneumoniae D39

99.779

100

0.998
  radA Streptococcus pneumoniae R6

99.779

100

0.998
  radA Streptococcus pneumoniae TIGR4

99.779

100

0.998
  radA Bacillus subtilis subsp. subtilis str. 168

63.135

100

0.631

Multiple sequence alignment