Detailed information NTG1111379

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACOB85_RS10460
• Genome accession: NZ_CP184834
• Coordinates: 563503..564372 (-)
• Length: 289 a.a.
• NCBI ID: WP_420788406.1
• Uniprot ID: -
• Organism: Vibrio alginolyticus strain HoVa25
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 558503..569372

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACOB85_RS10425 (ACOB85_10425)	rpsP	559077..559325 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
ACOB85_RS10430 (ACOB85_10430)	rimM	559355..559903 (+)	549	WP_005379964.1	ribosome maturation factor RimM	-
ACOB85_RS10435 (ACOB85_10435)	trmD	559931..560692 (+)	762	WP_005385420.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
ACOB85_RS10440 (ACOB85_10440)	rplS	560734..561087 (+)	354	WP_005379971.1	50S ribosomal protein L19	-
ACOB85_RS10445 (ACOB85_10445)	yacG	561767..561961 (-)	195	WP_017635922.1	DNA gyrase inhibitor YacG	-
ACOB85_RS10450 (ACOB85_10450)	zapD	562120..562860 (-)	741	WP_005373086.1	cell division protein ZapD	-
ACOB85_RS10455 (ACOB85_10455)	coaE	562888..563502 (-)	615	WP_420788405.1	dephospho-CoA kinase	-
ACOB85_RS10460 (ACOB85_10460)	pilD	563503..564372 (-)	870	WP_420788406.1	prepilin peptidase	Machinery gene
ACOB85_RS10465 (ACOB85_10465)	pilC	564437..565660 (-)	1224	WP_017635918.1	type II secretion system F family protein	Machinery gene
ACOB85_RS10470 (ACOB85_10470)	pilB	565684..567369 (-)	1686	WP_420788407.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACOB85_RS10475 (ACOB85_10475)	pilA	567382..567813 (-)	432	WP_420788408.1	pilin	Machinery gene
ACOB85_RS10480 (ACOB85_10480)	nadC	568069..568956 (-)	888	WP_005379983.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32577.79 Da
• Isoelectric Point: 6.8450

>NTDB_id=1111379 ACOB85_RS10460 WP_420788406.1 563503..564372(-) (pilD) [Vibrio alginolyticus strain HoVa25]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQATISARYPLIELLTAFCSGFIAYYFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
LFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGDQILNWYFTSVLGV

Nucleotide

• Length: 870 bp

>NTDB_id=1111379 ACOB85_RS10460 WP_420788406.1 563503..564372(-) (pilD) [Vibrio alginolyticus strain HoVa25]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTGATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTTCCACGCTCCTCCTGCCAGAAATGCGCAACACCGATACGTATTCGC
GACAACATTCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGTCACAACTGTCAGGCAACCATTAGTGCACGCTATCC
ACTGATTGAACTGCTCACCGCGTTCTGTTCTGGCTTTATCGCTTATTACTTTGGTTTTAGTTACTTTACCGTTGCCCTAC
TCTTTTTTACTTTTATCTTAATCGCCGCAACATTTATCGATCTCGATACTATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGTTACTTACCGGTAAAGAAGGAATGGGGTATGGTGATTTTA
AACTACTAGCGGCACTAGGAGCTTGGCTAGGTTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
TTATTTGGCATCATTCAACTACGCTTGCAAAAGCAGGGAATTGAAAAAGCTTTCCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGACCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	91.349	100	0.913
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	51.648	94.464	0.488
pilD	Acinetobacter nosocomialis M2	51.282	94.464	0.484
pilD	Neisseria gonorrhoeae MS11	47.292	95.848	0.453