Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACOI0R_RS20160 Genome accession   NZ_CP184802
Coordinates   3203338..3204870 (-) Length   510 a.a.
NCBI ID   WP_106223518.1    Uniprot ID   -
Organism   Photobacterium damselae subsp. piscicida strain DQ-SS1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3198338..3209870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOI0R_RS20130 - 3198343..3199017 (-) 675 WP_065171008.1 FadR/GntR family transcriptional regulator -
  ACOI0R_RS20135 - 3199398..3199571 (+) 174 WP_005302173.1 hypothetical protein -
  ACOI0R_RS20140 - 3199747..3200013 (+) 267 WP_005302176.1 YihD family protein -
  ACOI0R_RS20145 ccoG 3200203..3201540 (+) 1338 WP_420745393.1 cytochrome c oxidase accessory protein CcoG -
  ACOI0R_RS20150 - 3201583..3202572 (+) 990 WP_005302181.1 serine/threonine protein kinase -
  ACOI0R_RS20155 - 3202662..3203261 (+) 600 WP_370469096.1 thiol:disulfide interchange protein DsbA/DsbL -
  ACOI0R_RS20160 comM 3203338..3204870 (-) 1533 WP_106223518.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACOI0R_RS20165 ilvG 3205410..3207056 (+) 1647 WP_420745394.1 acetolactate synthase 2 catalytic subunit -
  ACOI0R_RS20170 ilvM 3207059..3207316 (+) 258 WP_036764608.1 acetolactate synthase 2 small subunit -
  ACOI0R_RS20175 - 3207356..3208285 (+) 930 WP_065171002.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 55106.43 Da        Isoelectric Point: 8.2787

>NTDB_id=1111355 ACOI0R_RS20160 WP_106223518.1 3203338..3204870(-) (comM) [Photobacterium damselae subsp. piscicida strain DQ-SS1]
MSLAIVHSRACVGVQAPAVTVEVHLSNGMPSFTLVGLPETTVKEAKDRVRSAIFNANFEFPSRRITVNLAPADLPKEGGR
FDLPIALGILAASGQIPAESLHKYEFLGELALSGQLRPVKGALPAALAALKAKRCLIVPDRNGDQVALVGEKQHKSAPDL
IQVCAHLLGQQSLSLRFQTKPDDDSLDLTQGRDMQDIIGQQQGKRALEIAAAGGHNLLFLGPPGTGKTMLASRLCDLLPP
MSHDEALETAAVASLTQQSIHQGNWLQRPLRAPHHSSSMAALVGGGSIPRPGEISLAHNGILFLDEMPEFERKVLDSLRE
PLESGEIVISRATSKATFPANFQLIGALNPSPTGFYEGAQTRTNPQVILRYLSKLSGPLLDRFDMSIEIPALPKGTLAQG
GERGESTPVIKARVNQARTLMDLRAGKVNARLSTRELDKHCALAREDAEFLENALHQLGLSIRAYHRIIKVARTIADLSN
CEQIERAHLAEALGYRAMDRLLKQLTAQAI

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=1111355 ACOI0R_RS20160 WP_106223518.1 3203338..3204870(-) (comM) [Photobacterium damselae subsp. piscicida strain DQ-SS1]
ATGTCATTGGCCATTGTGCATAGCCGGGCTTGCGTTGGGGTACAAGCTCCAGCAGTAACTGTTGAAGTTCATTTAAGTAA
TGGAATGCCCAGTTTTACTCTGGTGGGTTTACCTGAGACAACGGTAAAAGAGGCCAAAGATCGGGTTCGAAGTGCCATTT
TTAATGCCAATTTTGAGTTTCCCTCTCGGCGAATTACCGTCAATTTAGCGCCCGCTGATTTGCCTAAAGAAGGGGGCCGA
TTTGATTTACCAATCGCGCTTGGAATTTTAGCGGCTTCAGGACAAATACCCGCAGAATCGCTGCATAAATATGAATTTTT
AGGGGAGTTGGCTTTATCAGGGCAATTGCGTCCGGTAAAGGGTGCGCTGCCTGCTGCTCTTGCTGCATTAAAGGCGAAAA
GGTGCTTGATTGTTCCTGATCGTAATGGCGATCAAGTGGCATTAGTAGGCGAAAAACAACATAAGTCAGCGCCTGATTTG
ATCCAAGTTTGCGCTCACCTATTAGGACAGCAAAGTTTATCTTTACGCTTTCAAACAAAACCCGATGATGATTCGTTAGA
TCTGACTCAGGGGCGAGATATGCAAGATATTATTGGTCAGCAGCAAGGTAAGCGCGCATTGGAAATTGCAGCTGCTGGTG
GCCATAATCTTCTATTTCTTGGGCCGCCAGGAACGGGAAAAACCATGTTAGCCTCTCGGTTATGTGATTTATTACCTCCC
ATGAGCCATGATGAGGCGTTAGAAACTGCAGCTGTTGCCTCGCTGACTCAGCAGAGCATTCATCAAGGCAATTGGTTACA
ACGACCGCTACGTGCACCTCATCATTCAAGTTCTATGGCTGCCTTAGTTGGAGGGGGTTCAATTCCAAGGCCAGGAGAGA
TCTCTTTGGCGCATAACGGCATTCTTTTTTTAGATGAAATGCCCGAATTTGAGCGTAAGGTTTTGGACTCATTACGTGAA
CCTTTAGAGTCGGGAGAGATTGTGATTTCTCGGGCAACCAGTAAAGCAACCTTTCCAGCAAATTTTCAATTGATTGGAGC
GCTAAATCCGAGTCCAACAGGATTTTATGAAGGCGCACAAACTCGAACTAATCCTCAAGTTATTTTGCGCTATCTCAGTA
AACTCTCTGGCCCACTGCTTGATAGGTTTGATATGTCGATTGAGATCCCTGCTCTGCCTAAAGGTACTTTAGCTCAAGGT
GGCGAGCGCGGTGAGAGCACTCCTGTGATTAAAGCGCGAGTTAATCAGGCGCGAACCTTAATGGATCTGCGAGCAGGAAA
AGTAAATGCTCGGCTCTCTACTCGGGAGTTAGATAAACATTGCGCTCTGGCTCGAGAAGATGCGGAGTTTCTTGAAAATG
CACTGCATCAGTTGGGGCTATCGATTCGTGCGTACCATCGCATTATTAAGGTGGCACGAACCATTGCCGATTTAAGTAAT
TGTGAGCAGATAGAGCGAGCGCATTTAGCTGAAGCATTAGGATATCGAGCAATGGATCGGTTATTGAAGCAATTAACGGC
TCAAGCGATATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(193-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

76.863

100

0.769
  comM Vibrio cholerae strain A1552

76.471

100

0.765
  comM Glaesserella parasuis strain SC1401

63.333

100

0.633
  comM Haemophilus influenzae Rd KW20

62.722

99.412

0.624
  comM Legionella pneumophila str. Paris

49.699

97.843

0.486
  comM Legionella pneumophila strain ERS1305867

49.699

97.843

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.083

99.216

0.427

Multiple sequence alignment