Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACOI2Q_RS02065 Genome accession   NZ_CP184785
Coordinates   445817..447337 (-) Length   506 a.a.
NCBI ID   WP_420789355.1    Uniprot ID   -
Organism   Shewanella algae strain NJT6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 440817..452337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOI2Q_RS02040 (ACOI2Q_02040) phnC 441151..441978 (+) 828 WP_025010083.1 phosphonate ABC transporter ATP-binding protein -
  ACOI2Q_RS02045 (ACOI2Q_02045) phnE 441972..442775 (+) 804 WP_028780103.1 phosphonate ABC transporter, permease protein PhnE -
  ACOI2Q_RS02050 (ACOI2Q_02050) - 442794..443921 (+) 1128 WP_044735374.1 phosphonoacetaldehyde reductase -
  ACOI2Q_RS02055 (ACOI2Q_02055) phnX 443909..444718 (+) 810 WP_208123886.1 phosphonoacetaldehyde hydrolase -
  ACOI2Q_RS02060 (ACOI2Q_02060) - 444821..445717 (-) 897 WP_208142217.1 LysR substrate-binding domain-containing protein -
  ACOI2Q_RS02065 (ACOI2Q_02065) comM 445817..447337 (-) 1521 WP_420789355.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACOI2Q_RS02070 (ACOI2Q_02070) - 447495..447995 (-) 501 WP_420789356.1 hypothetical protein -
  ACOI2Q_RS02075 (ACOI2Q_02075) - 448260..448778 (-) 519 WP_071238974.1 winged helix-turn-helix domain-containing protein -
  ACOI2Q_RS02080 (ACOI2Q_02080) - 449097..449912 (+) 816 WP_208161561.1 EAL domain-containing protein -
  ACOI2Q_RS02085 (ACOI2Q_02085) - 450068..450316 (+) 249 WP_025010076.1 hypothetical protein -
  ACOI2Q_RS02090 (ACOI2Q_02090) - 450398..451474 (+) 1077 WP_420789358.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54513.96 Da        Isoelectric Point: 8.4927

>NTDB_id=1111247 ACOI2Q_RS02065 WP_420789355.1 445817..447337(-) (comM) [Shewanella algae strain NJT6]
MPIARVATRAAKGVEAPQVLVEAHLSNGLPAFNLVGLPEASVKEARERVRSAIINAGFEFPMRRITINLAPADLPKQGGR
YDLPIAIGILAASGQLPLKSLDDHEFVGELGLSGEVRHCTGILPVIIAARQRGIKLVLPQDNRSEADLVGYRQCCLAQHL
QHIAAYLHGQQTLPGIVPGTEWLEQSKPHSSDCLSEVIGQYQAKQALEIAAAGGHNLLMLGPPGTGKTMLASRIISLLPP
MSYEEALEVAAIHSVAGMATEPEEFYRRPFRAPHHTSSAISLVGGGSIPKPGEISLAHLGVLFLDEIAEFPRKVLDCLRE
PMETGHVIISRAAAKLRFDARFQLIAAMNPSPCGDAGPGSRASPEQIRRYLARLSGPFIDRFDLTIEVPKLPPGALTSEA
AQGETSEQIAARVAAARELQLSRAGVLNSQLGSKALKQAGFKPGDLAFLEQSVNQLGLSVRSFHRLQRVARTIADLQLSP
MVERRHLAQALGYRAMDRLLASLQQL

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1111247 ACOI2Q_RS02065 WP_420789355.1 445817..447337(-) (comM) [Shewanella algae strain NJT6]
ATGCCCATAGCCAGAGTTGCCACCCGAGCCGCCAAAGGTGTGGAGGCGCCTCAGGTACTGGTCGAAGCTCACCTCTCCAA
CGGCCTGCCGGCCTTCAATCTGGTGGGGTTGCCGGAAGCTTCGGTCAAGGAAGCCAGAGAAAGAGTCCGCAGCGCCATAA
TCAATGCGGGTTTTGAATTCCCCATGCGCAGGATAACCATCAATCTGGCACCGGCCGATCTGCCCAAGCAAGGTGGACGT
TACGACCTTCCTATTGCCATTGGTATTCTGGCAGCATCCGGGCAACTGCCACTGAAATCTCTGGACGATCATGAATTTGT
TGGTGAGCTTGGGCTGTCCGGTGAGGTCAGGCACTGCACTGGTATCCTGCCGGTGATCATCGCCGCCCGTCAAAGAGGCA
TCAAACTGGTGTTGCCACAGGATAACCGCAGTGAGGCGGATTTGGTGGGCTACCGGCAATGTTGCCTGGCCCAGCACCTG
CAACATATCGCCGCCTATCTGCATGGACAGCAAACTCTGCCGGGGATAGTACCGGGAACCGAATGGCTGGAACAGTCAAA
GCCGCACTCGAGTGATTGCCTGTCGGAGGTCATAGGCCAATATCAAGCCAAACAAGCGCTGGAAATCGCTGCCGCCGGCG
GGCATAACCTGCTGATGCTGGGGCCACCTGGCACAGGCAAAACCATGCTGGCCAGCCGGATAATCTCACTCCTGCCCCCC
ATGAGTTATGAAGAGGCGCTGGAAGTGGCTGCGATTCATTCAGTGGCCGGTATGGCTACTGAGCCGGAGGAGTTTTATCG
CCGCCCGTTTCGCGCTCCGCACCACACCAGCTCGGCCATCTCTTTGGTGGGTGGCGGCTCGATTCCCAAACCCGGCGAAA
TTTCACTGGCTCACCTGGGAGTACTGTTTCTCGATGAAATTGCCGAGTTTCCCCGCAAGGTACTCGACTGCTTGCGTGAA
CCCATGGAAACCGGCCATGTCATCATCTCCCGCGCCGCAGCCAAACTGCGCTTCGATGCCCGCTTTCAACTTATCGCCGC
CATGAACCCCAGCCCCTGTGGTGATGCCGGCCCGGGAAGCCGCGCCAGCCCAGAGCAGATCCGCCGTTACCTGGCCCGGC
TGTCAGGCCCTTTCATTGACAGATTCGACCTCACCATAGAGGTGCCCAAACTCCCGCCAGGCGCCTTGACCTCAGAGGCG
GCGCAGGGTGAAACCAGTGAGCAGATAGCCGCCAGAGTAGCGGCAGCGCGGGAGCTGCAACTCAGCCGCGCCGGCGTACT
CAATAGTCAGTTGGGCAGTAAGGCATTGAAGCAGGCAGGTTTCAAACCCGGCGATCTGGCTTTTCTCGAACAGAGTGTCA
ATCAGCTGGGATTATCGGTGCGCAGCTTTCATCGGCTGCAACGAGTGGCGCGCACCATAGCCGATCTGCAGCTCAGCCCC
ATGGTCGAGCGGCGCCATCTGGCCCAGGCCCTGGGTTATCGGGCGATGGACCGTTTGCTGGCCAGCCTGCAACAGCTCTG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.819

100

0.559
  comM Haemophilus influenzae Rd KW20

54.883

100

0.555
  comM Vibrio campbellii strain DS40M4

55.227

100

0.553
  comM Glaesserella parasuis strain SC1401

54.832

100

0.549
  comM Legionella pneumophila str. Paris

47.896

98.617

0.472
  comM Legionella pneumophila strain ERS1305867

47.896

98.617

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.281

100

0.433

Multiple sequence alignment