Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD3   Type   Regulator
Locus tag   ACNR93_RS08275 Genome accession   NZ_CP184736
Coordinates   1678438..1679832 (-) Length   464 a.a.
NCBI ID   WP_420543557.1    Uniprot ID   -
Organism   Streptococcus equinus strain NM-2-29     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 1673438..1684832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNR93_RS08260 (ACNR93_08260) comE/comE2 1674329..1675057 (-) 729 WP_420543554.1 LytR/AlgR family response regulator transcription factor Regulator
  ACNR93_RS08265 (ACNR93_08265) comD/comD3 1675675..1677066 (-) 1392 WP_420543555.1 sensor histidine kinase Regulator
  ACNR93_RS08270 (ACNR93_08270) comD/comD3 1677063..1678145 (-) 1083 WP_420543556.1 sensor histidine kinase Regulator
  ACNR93_RS08275 (ACNR93_08275) comD/comD3 1678438..1679832 (-) 1395 WP_420543557.1 sensor histidine kinase Regulator
  ACNR93_RS08280 (ACNR93_08280) - 1679833..1680030 (-) 198 WP_126438119.1 hypothetical protein -
  ACNR93_RS08285 (ACNR93_08285) - 1680191..1680484 (-) 294 WP_039697859.1 bacteriocin immunity protein -
  ACNR93_RS08290 (ACNR93_08290) - 1680514..1680819 (-) 306 WP_420543558.1 bacteriocin immunity protein -
  ACNR93_RS08295 (ACNR93_08295) - 1680839..1681126 (-) 288 WP_420543559.1 DUF3884 family protein -
  ACNR93_RS08300 (ACNR93_08300) - 1681309..1682631 (-) 1323 WP_420543560.1 sensor histidine kinase -
  ACNR93_RS08305 (ACNR93_08305) comC/comC1 1682945..1683097 (+) 153 WP_420543561.1 hypothetical protein Regulator
  ACNR93_RS08310 (ACNR93_08310) comD/comD1 1683113..1684387 (-) 1275 WP_420543562.1 sensor histidine kinase Regulator

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 53280.14 Da        Isoelectric Point: 6.8521

>NTDB_id=1110968 ACNR93_RS08275 WP_420543557.1 1678438..1679832(-) (comD/comD3) [Streptococcus equinus strain NM-2-29]
MRMIFMEVLGVLMNFSSFLILGVLFQQITKNKLTLGEWIFGILFIQIFSLGLAYSFVYRFNIAVLITKDVAPAACLMLIS
YHHNPRISFRYHLFYALYPINVHIILQRVYAYLLMMLFSIEITPRFDTAPIVTIIATIIAIFIPPVLYYLISKWLNIDIS
NVRKTLKNYLSSGVLTIVNILMVVYYFGNDYLALEVPSDSPILKIIVRTGAFIYLFLLFAFLFYLNFRHGQEQKNELLRN
QEMELKSLENYSKHVESLYQEVRSFRHDYANVLMSLKVGIDQGDLDNIKKIYEEITADSAKLVKNNKFDLTRLANISDSA
VKSLMSAKFLKAENRGIEISLEVAEPMKNPAIPLISYIRILSILFDNAIEAALESENPKIAVANFYQDGDFVFIIENSTR
EKSVDLSKIFQRGYSTKGDNRGLGLATLVDFQDDYENLSVETSSSDYTFTQVVRIYDREGKNIG

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1110968 ACNR93_RS08275 WP_420543557.1 1678438..1679832(-) (comD/comD3) [Streptococcus equinus strain NM-2-29]
ATGCGAATGATTTTTATGGAAGTATTAGGGGTTCTGATGAATTTTTCGTCTTTTTTAATATTAGGAGTTTTATTTCAGCA
GATAACTAAAAATAAACTCACTTTAGGGGAGTGGATTTTTGGAATATTATTTATTCAAATTTTTTCTCTTGGGCTTGCCT
ACAGTTTTGTCTATCGTTTTAATATTGCTGTTCTAATAACTAAGGATGTTGCGCCAGCAGCCTGTTTGATGTTAATTTCA
TATCATCATAATCCTAGAATTAGTTTTAGGTATCATCTTTTTTATGCTTTATATCCTATTAATGTTCACATAATTTTACA
AAGAGTATATGCCTATTTGTTAATGATGCTCTTTTCAATTGAAATTACTCCTCGGTTTGACACTGCGCCGATAGTTACAA
TTATTGCTACAATTATCGCTATTTTTATACCGCCAGTTTTATATTATTTGATATCAAAGTGGCTTAATATTGATATTTCA
AATGTTCGAAAAACATTAAAAAATTATCTAAGTTCAGGAGTTTTGACGATTGTTAATATTTTAATGGTGGTTTATTATTT
CGGAAATGATTATCTTGCTTTAGAGGTGCCATCGGATTCTCCAATTTTAAAAATAATTGTGAGAACTGGTGCTTTTATCT
ATTTATTCCTCCTTTTTGCCTTCCTTTTCTACCTTAACTTTCGTCACGGGCAGGAGCAGAAAAATGAGCTGCTTCGCAAT
CAGGAAATGGAGCTTAAATCTTTGGAAAATTATAGTAAACATGTGGAGAGTTTGTACCAAGAAGTGCGCAGTTTTCGTCA
CGATTACGCTAATGTTTTGATGAGTTTAAAGGTCGGCATTGATCAAGGTGACCTTGATAATATCAAGAAAATTTACGAAG
AAATCACGGCTGACTCAGCGAAGCTGGTCAAAAACAATAAGTTTGATTTGACGCGATTAGCAAATATTTCAGACAGTGCC
GTCAAAAGTCTCATGTCGGCTAAATTTTTAAAGGCTGAAAATCGTGGCATTGAAATCAGTTTAGAAGTGGCAGAGCCAAT
GAAAAATCCAGCTATTCCGTTGATTTCTTATATTCGAATCTTGTCGATTCTATTTGACAATGCCATCGAGGCTGCTTTAG
AGTCGGAAAATCCCAAAATCGCAGTAGCGAATTTTTACCAAGATGGAGATTTTGTGTTTATCATTGAAAATTCGACTAGG
GAAAAATCTGTAGATTTATCTAAAATTTTCCAACGTGGTTACTCTACAAAAGGTGATAATCGCGGACTTGGTCTTGCGAC
GTTGGTGGATTTTCAGGATGATTACGAAAATTTGTCAGTTGAAACCAGCAGTTCAGATTACACATTCACACAAGTAGTGA
GAATATACGATAGAGAAGGTAAAAATATTGGATAA

Domains

Predicted by InterproScan.

GHKL domain (HATPase_c_5)

(358-455)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD3 Streptococcus equinus JB1

68.132

98.06

0.668
  comD/comD2 Streptococcus equinus JB1

75.472

68.534

0.517

Multiple sequence alignment