Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD3   Type   Regulator
Locus tag   ACNR93_RS08265 Genome accession   NZ_CP184736
Coordinates   1675675..1677066 (-) Length   463 a.a.
NCBI ID   WP_420543555.1    Uniprot ID   -
Organism   Streptococcus equinus strain NM-2-29     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 1670675..1682066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNR93_RS08240 (ACNR93_08240) - 1671872..1672504 (-) 633 WP_420543552.1 thiamine diphosphokinase -
  ACNR93_RS08245 (ACNR93_08245) rpe 1672497..1673159 (-) 663 WP_420543553.1 ribulose-phosphate 3-epimerase -
  ACNR93_RS08250 (ACNR93_08250) rsgA 1673166..1674038 (-) 873 WP_303189848.1 ribosome small subunit-dependent GTPase A -
  ACNR93_RS08260 (ACNR93_08260) comE/comE2 1674329..1675057 (-) 729 WP_420543554.1 LytR/AlgR family response regulator transcription factor Regulator
  ACNR93_RS08265 (ACNR93_08265) comD/comD3 1675675..1677066 (-) 1392 WP_420543555.1 sensor histidine kinase Regulator
  ACNR93_RS08270 (ACNR93_08270) comD/comD3 1677063..1678145 (-) 1083 WP_420543556.1 sensor histidine kinase Regulator
  ACNR93_RS08275 (ACNR93_08275) comD/comD3 1678438..1679832 (-) 1395 WP_420543557.1 sensor histidine kinase Regulator
  ACNR93_RS08280 (ACNR93_08280) - 1679833..1680030 (-) 198 WP_126438119.1 hypothetical protein -
  ACNR93_RS08285 (ACNR93_08285) - 1680191..1680484 (-) 294 WP_039697859.1 bacteriocin immunity protein -
  ACNR93_RS08290 (ACNR93_08290) - 1680514..1680819 (-) 306 WP_420543558.1 bacteriocin immunity protein -
  ACNR93_RS08295 (ACNR93_08295) - 1680839..1681126 (-) 288 WP_420543559.1 DUF3884 family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 53274.46 Da        Isoelectric Point: 7.9058

>NTDB_id=1110966 ACNR93_RS08265 WP_420543555.1 1675675..1677066(-) (comD/comD3) [Streptococcus equinus strain NM-2-29]
MIEIIKYIIALLLNFWGFVIIGFLFQQITKTKITLLEWFAIIMFVQIGSIAFGNLTGNSLKIVLLVIKDIVVIFGFMIIS
CRHNPKLEIRYHIFYALYPNSLYLIIQGVYGYTMMGIFSIKITPMAAQVHSWLVWIITITAIFAPPIFYHLMSKWLNIDI
SNVRKTLKHYLSARALRVVNVLLLIFYPGIECFAAILPFEKMSTNRNVYRLTFLVYFLLLFAFLFYLNFRHGQEQKNELL
RNQEMELKALENYSKHVESLYQEVRSFRHDYANVLMSLKVGIDQGDLDNIKKIYEEITADSAKLVKNNKFDLTRLANISD
SAVKSLMSAKFLEAENRGIEISLEVAEPMKNPAIPLISYIRILSILFDNAIEGALESDELKIAVANFYQDGDFVLIIENS
TKEKSVDLSKIFQRGYSTKGENRGLGLATLVDFQDDYENLSVETSSLDYKFTQVVRVYEGKNG

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=1110966 ACNR93_RS08265 WP_420543555.1 1675675..1677066(-) (comD/comD3) [Streptococcus equinus strain NM-2-29]
ATGATTGAAATTATTAAATATATTATTGCATTGCTTTTGAATTTTTGGGGATTTGTTATAATTGGTTTTCTTTTCCAGCA
AATAACTAAAACTAAGATAACTCTCTTAGAATGGTTTGCGATAATTATGTTTGTCCAAATTGGGTCTATTGCTTTTGGCA
ACCTAACTGGCAATAGTTTAAAGATAGTTTTATTAGTTATAAAAGATATCGTTGTTATTTTTGGTTTTATGATAATATCA
TGCAGACACAACCCAAAACTAGAAATCAGATATCACATTTTTTATGCTTTGTATCCAAATAGTCTCTATTTGATTATACA
AGGAGTTTATGGATATACAATGATGGGGATCTTTTCGATAAAAATAACTCCGATGGCAGCCCAAGTACATTCTTGGTTAG
TTTGGATTATCACTATTACAGCTATTTTTGCTCCACCAATTTTTTATCATTTGATGTCGAAATGGTTAAACATTGATATT
TCAAATGTTCGAAAGACGCTAAAACATTATCTTAGTGCAAGAGCATTAAGAGTTGTAAATGTTCTATTGCTGATTTTTTA
TCCGGGTATAGAATGTTTTGCAGCAATATTACCTTTTGAAAAAATGTCAACGAATAGAAATGTTTATAGACTAACTTTTC
TTGTCTATTTTCTTCTCCTTTTTGCCTTCCTCTTCTATCTTAATTTCCGTCATGGGCAGGAGCAGAAAAATGAGCTGCTC
CGCAATCAGGAAATGGAGCTTAAAGCTTTGGAAAATTATAGTAAACATGTGGAGAGTTTGTACCAAGAAGTACGCAGTTT
TCGTCACGATTACGCTAATGTTTTGATGAGTTTGAAGGTTGGGATAGATCAAGGTGACCTTGATAATATCAAGAAAATTT
ACGAAGAAATCACGGCTGACTCAGCGAAGCTGGTCAAAAACAATAAGTTTGATTTGACGCGACTAGCAAATATTTCAGAC
AGTGCCGTCAAAAGTCTCATGTCGGCTAAATTTTTGGAGGCTGAAAATCGTGGCATTGAAATCAGTTTAGAAGTGGCAGA
GCCGATGAAAAATCCAGCTATTCCACTGATTTCTTACATTCGAATTTTATCAATTCTGTTTGACAATGCCATCGAAGGAG
CTTTAGAGTCAGATGAGCTAAAAATCGCAGTAGCGAATTTTTACCAAGACGGAGATTTTGTGTTGATCATTGAAAATTCG
ACTAAGGAAAAATCTGTGGATTTATCCAAGATTTTCCAGCGTGGGTACTCAACAAAAGGTGAAAATCGCGGTCTGGGTCT
TGCGACGTTGGTGGATTTTCAGGATGATTACGAGAATTTGTCAGTTGAAACCAGCAGTCTCGATTACAAATTTACGCAAG
TTGTGAGAGTTTATGAGGGGAAAAATGGCTAA

Domains

Predicted by InterproScan.

GHKL domain (HATPase_c_5)

(360-455)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD3 Streptococcus equinus JB1

74.348

99.352

0.739
  comD/comD2 Streptococcus equinus JB1

73.718

67.387

0.497

Multiple sequence alignment