Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACN079_RS22225 Genome accession   NZ_CP184478
Coordinates   4909645..4911138 (-) Length   497 a.a.
NCBI ID   WP_420231867.1    Uniprot ID   -
Organism   Pseudomonas sp. ABY48     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4904645..4916138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN079_RS22205 (ACN079_22205) - 4904964..4905884 (+) 921 WP_122567544.1 LysR substrate-binding domain-containing protein -
  ACN079_RS22210 (ACN079_22210) - 4906230..4907144 (+) 915 Protein_4404 Cache 3/Cache 2 fusion domain-containing protein -
  ACN079_RS22215 (ACN079_22215) - 4907325..4908047 (+) 723 WP_420235448.1 methyl-accepting chemotaxis protein -
  ACN079_RS22220 (ACN079_22220) - 4908424..4909638 (+) 1215 WP_420231866.1 aldose 1-epimerase family protein -
  ACN079_RS22225 (ACN079_22225) comM 4909645..4911138 (-) 1494 WP_420231867.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACN079_RS22230 (ACN079_22230) - 4911467..4912051 (+) 585 WP_420231868.1 hypothetical protein -
  ACN079_RS22235 (ACN079_22235) - 4912078..4912208 (-) 131 Protein_4409 EamA/RhaT family transporter -
  ACN079_RS22240 (ACN079_22240) - 4912249..4912509 (-) 261 WP_003206819.1 accessory factor UbiK family protein -
  ACN079_RS22245 (ACN079_22245) glnK 4912925..4913263 (+) 339 WP_002555808.1 P-II family nitrogen regulator -
  ACN079_RS22250 (ACN079_22250) - 4913297..4914631 (+) 1335 WP_046064432.1 ammonium transporter -
  ACN079_RS22255 (ACN079_22255) - 4914844..4915270 (+) 427 Protein_4413 secondary thiamine-phosphate synthase enzyme YjbQ -
  ACN079_RS22260 (ACN079_22260) sutA 4915373..4915696 (+) 324 WP_014340827.1 transcriptional regulator SutA -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53121.22 Da        Isoelectric Point: 8.1625

>NTDB_id=1108422 ACN079_RS22225 WP_420231867.1 4909645..4911138(-) (comM) [Pseudomonas sp. ABY48]
MSLAIVHSRAQVGVEAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLNFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDVECLGELALSGAVRPVRGVLPAALAARKAGRMLVVPRANAEEACLASGLKVIAVDHL
LEAVAHFNGHTPVEPFVSNGLLSASKPYPDLNEVQGQAGAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
SEALEVAAIQSVASCVPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRRVLEVLREPLES
GHIVVSRARDRVRFPARFQLVAAMNPCPCGYLGEPSGRCCCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPKRES
GDDTATVAEQVAEARERQHKRQGCANAFLDLPGLRRHCKLSTTDETWLETACERLTLSLRAAHRLLKVARTLADLEQVGG
IRREHLAEALQYRPTTP

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=1108422 ACN079_RS22225 WP_420231867.1 4909645..4911138(-) (comM) [Pseudomonas sp. ABY48]
ATGTCGCTTGCCATTGTCCACAGCCGCGCCCAAGTAGGGGTCGAGGCTCCTGCCGTTACCGTTGAAGTCCACCTGGCCAA
TGGCTTGCCGTCGCTGACGATGGTTGGCCTGCCGGAAGCGGCGGTAAAGGAAAGCAAGGATCGGGTACGCAGCGCGATCA
TCAATTCGGGGCTGAACTTCCCGGCACGACGCATCACCCTGAATCTGGCGCCGGCGGACCTGCCCAAGGACGGCGGGCGC
TTCGACCTGGCCATTGCCTTGGGCATCCTGTCGGCCAGCGTGCAGGTGCCGACCCTGACGCTGGACGACGTGGAATGCCT
CGGTGAACTGGCCTTGTCCGGCGCGGTGCGACCGGTGCGCGGGGTATTGCCCGCGGCGCTGGCGGCACGCAAGGCCGGGC
GCATGCTGGTGGTACCGCGGGCCAATGCCGAAGAGGCCTGCCTGGCCTCGGGGTTGAAGGTGATCGCCGTGGACCATCTG
CTCGAGGCGGTAGCGCATTTCAACGGTCACACGCCGGTCGAGCCGTTCGTTTCCAACGGGTTGCTCTCGGCCAGCAAGCC
CTACCCCGATCTGAACGAAGTACAAGGCCAGGCCGGGGCCAAGCGGGCCTTGCTGATTGCCGCTGCGGGGGCTCATAACC
TGTTGTTCAGCGGGCCACCGGGCACCGGCAAGACGCTGTTGGCGAGCCGCCTGCCGGGGCTATTGCCGCCACTGGCCGAG
AGCGAAGCCCTGGAGGTCGCGGCCATCCAGTCGGTGGCCAGTTGCGTACCGTTGAGCCACTGGCCGCAGCGTCCGTTTCG
CCAGCCACACCACTCGGCTTCCGGCCCGGCGCTGGTGGGTGGCGGGTCAAAGCCGCAGCCAGGGGAGATCACCCTCGCCC
ACCATGGCGTGCTGTTTCTGGATGAACTGCCGGAATTCGACCGCAGGGTACTGGAGGTCCTGAGAGAGCCGCTGGAGTCT
GGGCACATCGTGGTTTCTCGTGCCCGCGACCGAGTGCGCTTCCCGGCGCGTTTCCAGTTGGTAGCGGCAATGAATCCCTG
TCCCTGTGGATATCTTGGCGAGCCCAGCGGCCGCTGCTGCTGTACACCGGACATGGTGCAGCGCTACCGCAACAAACTCT
CCGGCCCGCTGCTGGACCGCATCGACCTGCACCTGACCGTCGCCCGGGAAGCCACGGCGTTGAACCCCAAGCGCGAATCC
GGAGACGATACCGCCACGGTCGCCGAGCAGGTGGCCGAGGCCCGGGAGCGTCAGCACAAGCGCCAGGGCTGCGCCAACGC
CTTCCTCGATCTGCCGGGGTTGCGCCGACACTGCAAGTTATCCACAACCGATGAAACCTGGCTGGAAACCGCCTGCGAAC
GGCTGACCCTGTCGCTGCGCGCCGCCCACCGCTTGCTCAAGGTCGCCCGGACGCTGGCAGACCTGGAACAAGTGGGGGGT
ATCCGCCGCGAACATCTGGCCGAAGCATTGCAGTATCGGCCAACTACCCCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.152

99.598

0.549
  comM Vibrio cholerae strain A1552

54.949

99.598

0.547
  comM Haemophilus influenzae Rd KW20

53.507

100

0.537
  comM Glaesserella parasuis strain SC1401

52.6

100

0.529
  comM Legionella pneumophila str. Paris

50

99.799

0.499
  comM Legionella pneumophila strain ERS1305867

50

99.799

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.833

100

0.465

Multiple sequence alignment