Detailed information NTG1108129

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: ACOIYJ_RS14585
• Genome accession: NZ_CP184271
• Coordinates: 3203033..3204559 (-)
• Length: 508 a.a.
• NCBI ID: WP_180743828.1
• Uniprot ID: A0A7V8PPR6
• Organism: Pectobacterium brasiliense strain CSR2
• Function: require for natural transformation (predicted from homology) Unclear

Genomic Context

Location: 3198033..3209559

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACOIYJ_RS14560	ytfR	3198189..3199709 (+)	1521	WP_180743833.1	galactofuranose ABC transporter, ATP-binding protein YtfR	-
ACOIYJ_RS14565	ytfT	3199696..3200706 (+)	1011	WP_420064518.1	galactofuranose ABC transporter, ATP-binding protein YtfT	-
ACOIYJ_RS14570	yjfF	3200706..3201668 (+)	963	WP_182100878.1	galactofuranose ABC transporter, permease protein YjfF	-
ACOIYJ_RS14575	hdfR	3201689..3202516 (-)	828	WP_420064517.1	HTH-type transcriptional regulator HdfR	-
ACOIYJ_RS14580	-	3202637..3202975 (+)	339	WP_180743829.1	DUF413 domain-containing protein	-
ACOIYJ_RS14585	comM	3203033..3204559 (-)	1527	WP_180743828.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
ACOIYJ_RS14590	ilvL	3204967..3205065 (+)	99	WP_071531109.1	ilv operon leader peptide	-
ACOIYJ_RS14595	ilvG	3205206..3206849 (+)	1644	WP_420064516.1	acetolactate synthase 2 catalytic subunit	-
ACOIYJ_RS14600	ilvM	3206910..3207170 (+)	261	WP_010294673.1	acetolactate synthase 2 small subunit	-
ACOIYJ_RS14605	-	3207198..3208124 (+)	927	WP_180743826.1	branched-chain amino acid transaminase	-

Sequence

Protein

• Length: 508 a.a.
• Molecular weight: 55366.92 Da
• Isoelectric Point: 6.8235

>NTDB_id=1108129 ACOIYJ_RS14585 WP_180743828.1 3203033..3204559(-) (comM) [Pectobacterium brasiliense strain CSR2]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKSGRQLILPDDNKREMTLIPQGEALMAGHL
LDVCAFLSGEGELLSCSDIVPAPQSEEDVLDLKDIIGQDQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
DEEALESAAINSLINIDATMTRWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGIHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQRH
QGESSATIRERVLLARQIQLKRANKINALLTSREIEQHCALEAPDAAYLEEVMNKLGLSVRAWHRILKVARTIADLGDRD
NIERKHLAEALSYRSMDRLLIRLHKSLE

Nucleotide

• Length: 1527 bp

>NTDB_id=1108129 ACOIYJ_RS14585 WP_180743828.1 3203033..3204559(-) (comM) [Pectobacterium brasiliense strain CSR2]
ATGTCATTGGCAGTTACCTACACTCGGGCAATGATTGGCGTACAAGCGCCGGACGTTTACATTGAAGTGCATATCAGTAG
CGGGCTACCTGCTCTGACTCTGGTAGGCTTACCAGAAACTACCGTCAAAGAAGCGCGCGATCGCGTGCGCAGCGCACTCA
TCAATTGTGGGTTTACCTTTCCAGCCAAGCGCATCACGGTCAACCTTGCTCCCGCAGACCTGCCAAAAGAAGGGGGCCGC
TACGATCTGCCGATTGCTCTGGCGATTCTGGCCGCATCAGAACAAATCGATGGGGAAAAGCTAAGCCGCTACGAGTTTCT
GGGCGAGCTTGGCCTGTCTGGCACCTTACGTGGCGTCAATGGCGCGATTCCCGCCGCTCTAGAGGCCATCAAGTCAGGCC
GCCAGCTTATCCTGCCAGATGACAACAAACGGGAGATGACGCTAATACCGCAGGGTGAGGCGCTCATGGCTGGGCATTTG
TTGGACGTGTGTGCTTTTCTTAGCGGAGAAGGGGAATTGCTCAGTTGCTCCGACATCGTACCGGCTCCGCAATCAGAAGA
AGATGTCCTCGACCTGAAGGATATCATCGGTCAGGATCAGGCTAAACGCGCGTTGGAAATCGCAGCGGCTGGCGGCCACA
ATCTGCTATTGCTGGGGCCGCCAGGAACAGGAAAAACCATGCTGGCGAGCCGATTAGGCAATCTGATGCCGCCATTAAGC
GACGAAGAAGCGCTGGAAAGCGCCGCCATCAACAGTCTCATCAACATTGATGCCACCATGACGCGTTGGCGAGCCAGACC
ATTCAGAGCGCCTCACCATAGTTCTTCCATGGCGGCGCTCGTGGGAGGAGGGTCGTTGCCTAAACCGGGGGAAATTTCAC
TCGCCCACAACGGCGTACTGTTTCTGGATGAATTACCAGAGTTTGAGCGACGCGTCCTGGATTCCCTACGAGAGCCTCTG
GAATCCGGTGAAATTATCATTTCCCGCACGCGCGCCAAAGTGTGCTACCCAGCACGCGTACAGCTCGTCGCTGCAATGAA
CCCCAGCCCGTCAGGGCACTATCAAGGCATTCATAACCGATTACCCGCACAGCAAATACTGCGCTATCTCAGCAAACTTT
CCGGTCCCTTTTTGGATCGCTTTGACCTTTCTATCGAAGTTCCTTTGCTACCACCAGGAGTTTTATCTCAGCAACGTCAT
CAGGGGGAAAGCAGCGCAACAATCCGCGAGCGCGTGCTGCTCGCACGGCAGATACAGCTGAAGCGGGCAAATAAAATCAA
CGCGCTGCTCACCTCACGCGAAATAGAACAACACTGTGCGTTAGAAGCGCCTGATGCGGCTTATCTGGAAGAAGTGATGA
ACAAACTTGGCTTATCCGTACGCGCCTGGCACCGGATATTGAAAGTCGCACGCACAATCGCAGACCTCGGCGATCGGGAC
AACATCGAGAGGAAACATCTTGCCGAAGCACTGAGCTATCGCAGTATGGATCGACTGCTCATTCGGCTCCACAAAAGCCT
TGAATAG

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (402-494)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (191-390)

3D structure

• AlphaFold DB: A0A7V8PPR6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Haemophilus influenzae Rd KW20	64.229	99.606	0.64
comM	Glaesserella parasuis strain SC1401	63.314	99.803	0.632
comM	Vibrio cholerae strain A1552	63.817	99.016	0.632
comM	Vibrio campbellii strain DS40M4	62.451	99.606	0.622
comM	Legionella pneumophila str. Paris	50.501	98.228	0.496
comM	Legionella pneumophila strain ERS1305867	50.501	98.228	0.496
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	47.14	99.803	0.47