Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACOIYJ_RS11130 | Genome accession | NZ_CP184271 |
| Coordinates | 2430646..2431176 (-) | Length | 176 a.a. |
| NCBI ID | WP_180741590.1 | Uniprot ID | A0A7V8PK95 |
| Organism | Pectobacterium brasiliense strain CSR2 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2425646..2436176
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACOIYJ_RS11105 | - | 2425829..2426920 (+) | 1092 | WP_420064168.1 | ABC transporter ATP-binding protein | - |
| ACOIYJ_RS11110 | - | 2426944..2427939 (+) | 996 | WP_180741587.1 | carbohydrate ABC transporter permease | - |
| ACOIYJ_RS11115 | - | 2427951..2429003 (+) | 1053 | WP_219606630.1 | carbohydrate ABC transporter permease | - |
| ACOIYJ_RS11120 | - | 2429003..2430043 (+) | 1041 | WP_180741588.1 | LacI family DNA-binding transcriptional regulator | - |
| ACOIYJ_RS11125 | - | 2430069..2430560 (-) | 492 | WP_180741589.1 | hypothetical protein | - |
| ACOIYJ_RS11130 | ssb | 2430646..2431176 (-) | 531 | WP_180741590.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| ACOIYJ_RS11135 | uvrA | 2431503..2434337 (+) | 2835 | WP_420064166.1 | excinuclease ABC subunit UvrA | - |
| ACOIYJ_RS11140 | - | 2434353..2434772 (+) | 420 | WP_180741592.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| ACOIYJ_RS11145 | - | 2435199..2436056 (+) | 858 | WP_420064165.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 176 a.a. Molecular weight: 18829.82 Da Isoelectric Point: 5.2456
>NTDB_id=1108122 ACOIYJ_RS11130 WP_180741590.1 2430646..2431176(-) (ssb) [Pectobacterium brasiliense strain CSR2]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGAQQQGGWGQPQQPQGGNQFSGGAQSQQRPAQNSAP
AQSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGAQQQGGWGQPQQPQGGNQFSGGAQSQQRPAQNSAP
AQSNEPPMDFDDDIPF
Nucleotide
Download Length: 531 bp
>NTDB_id=1108122 ACOIYJ_RS11130 WP_180741590.1 2430646..2431176(-) (ssb) [Pectobacterium brasiliense strain CSR2]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCGACGTCAGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AATGGCACCGTGTCGTGCTGTTCGGCAAATTGGCAGAAGTCGCAGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATT
GAAGGCGCACTGCAAACCCGTAAATGGGCCGACCAGGCTGGCGTAGAGCGCTACACCACCGAAGTCGTCGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGACGCCAGGGCGGCGGCGCACCAGCAGGTGGCGCTCAGCAACAAGGCGGTTGGGGTC
AACCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAATCTCAACAGCGTCCGGCACAGAACAGCGCTCCA
GCACAAAGCAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCGACGTCAGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AATGGCACCGTGTCGTGCTGTTCGGCAAATTGGCAGAAGTCGCAGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATT
GAAGGCGCACTGCAAACCCGTAAATGGGCCGACCAGGCTGGCGTAGAGCGCTACACCACCGAAGTCGTCGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGACGCCAGGGCGGCGGCGCACCAGCAGGTGGCGCTCAGCAACAAGGCGGTTGGGGTC
AACCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAATCTCAACAGCGTCCGGCACAGAACAGCGCTCCA
GCACAAAGCAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
72.193 |
100 |
0.767 |
| ssb | Glaesserella parasuis strain SC1401 |
57.297 |
100 |
0.602 |
| ssb | Neisseria meningitidis MC58 |
46.591 |
100 |
0.466 |
| ssb | Neisseria gonorrhoeae MS11 |
46.591 |
100 |
0.466 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
36.723 |
100 |
0.369 |