Detailed information NTG0110809

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: ID09_RS00235
• Genome accession: NZ_CP008921
• Coordinates: 35996..36997 (+)
• Length: 333 a.a.
• NCBI ID: WP_024377694.1
• Uniprot ID: -
• Organism: Streptococcus suis 6407
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 30996..41997

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ID09_RS00210 (ID09_00230)	-	31046..31624 (+)	579	WP_011921662.1	CPBP family intramembrane glutamic endopeptidase	-
ID09_RS00215 (ID09_00235)	-	31639..32067 (+)	429	WP_014636188.1	Msa family membrane protein	-
ID09_RS00220 (ID09_00240)	-	32060..32932 (+)	873	WP_011921665.1	ABC transporter ATP-binding protein	-
ID09_RS00225 (ID09_00245)	-	32938..33711 (+)	774	WP_012775420.1	membrane protein	-
ID09_RS00230 (ID09_00250)	-	33714..35426 (+)	1713	WP_014917170.1	ABC transporter ATP-binding protein	-
ID09_RS12130	-	35528..35701 (+)	174	WP_014735240.1	hypothetical protein	-
ID09_RS00235 (ID09_00260)	ruvB	35996..36997 (+)	1002	WP_024377694.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
ID09_RS00240 (ID09_00265)	-	37065..37700 (+)	636	WP_024382137.1	HAD-IA family hydrolase	-
ID09_RS00245 (ID09_00270)	comR	37947..38846 (+)	900	WP_024382136.1	helix-turn-helix domain-containing protein	Regulator
ID09_RS00250 (ID09_00275)	-	39272..40460 (+)	1189	Protein_30	IS110 family transposase	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 37627.15 Da
• Isoelectric Point: 4.4673

>NTDB_id=110809 ID09_RS00235 WP_024377694.1 35996..36997(+) (ruvB) [Streptococcus suis 6407]
MTNRILDMEQMQDEEYVERTLRPQKLNEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVN
IKQTSGPVIEKAGDLVALLNDLEPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAGEASRSVHLELPPFTLIGATT
RAGMLSNPLRARFGITGHMEYYELADLTEIVERTADIFDMEITHEAAIELARRSRGTPRIANRLLKRVRDFAQIMGDGLI
DDTITDKALTMLDVDREGLDYVDQKILRTMIEMYGGGPVGLNTLSVNIAEERETVEDMYEPYLIQQGFLMRTRTGRVATA
KAYEHLGYPYTEK

Nucleotide

• Length: 1002 bp

>NTDB_id=110809 ID09_RS00235 WP_024377694.1 35996..36997(+) (ruvB) [Streptococcus suis 6407]
ATGACAAATCGAATTTTAGATATGGAACAAATGCAGGACGAGGAGTATGTTGAGCGTACCCTGCGTCCACAGAAATTAAA
TGAGTACATCGGTCAGGACAAGGTTAAGGACCAGCTGAAAATCTTTATCGAGGCAGCCAAGCTCCGTGATGAAGCCTTGG
ACCATACCCTTCTGTTTGGACCTCCAGGTTTGGGGAAGACCACCATGGCTTTTGTCATTGCCAACGAACTAGGCGTCAAT
ATCAAGCAGACCAGTGGTCCTGTTATTGAAAAAGCAGGTGACTTGGTGGCCCTTCTCAACGACTTGGAGCCTGGCGACGT
CCTCTTTATCGATGAAATCCACCGTATGCCCATGGCGGTCGAGGAAATTCTCTACTCTGCTATGGAGGATTTCTACATCG
ACATCATGATTGGGGCTGGGGAAGCCAGTCGCTCCGTGCATTTGGAGTTGCCACCTTTTACCCTGATTGGAGCGACCACT
CGTGCGGGTATGCTGTCCAATCCCCTGCGGGCTCGTTTTGGTATTACCGGCCATATGGAGTATTATGAACTGGCTGATTT
GACGGAGATTGTCGAGCGGACAGCGGACATCTTTGACATGGAGATTACTCATGAAGCAGCGATCGAGCTGGCTCGTCGTT
CCCGTGGGACCCCTCGTATCGCCAACCGCCTGCTCAAGCGGGTGAGGGATTTTGCACAGATTATGGGCGATGGTCTGATT
GATGATACCATTACGGACAAGGCCTTGACTATGCTGGATGTGGACCGCGAGGGGCTGGACTACGTGGACCAAAAGATTCT
CCGTACCATGATTGAGATGTATGGCGGCGGTCCTGTCGGTCTTAACACCCTGTCGGTCAATATTGCCGAGGAGCGTGAGA
CGGTGGAGGACATGTACGAACCTTACCTGATTCAGCAGGGCTTCCTCATGCGGACGCGGACAGGTCGGGTCGCGACAGCT
AAGGCTTACGAGCACTTGGGTTATCCCTATACGGAAAAATAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

• RuvB AAA lid domain (AAA_lid_4) (182-255)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	90.332	99.399	0.898
ruvB	Streptococcus pneumoniae R6	90.03	99.399	0.895
ruvB	Streptococcus pneumoniae D39	90.03	99.399	0.895
ruvB	Bacillus subtilis subsp. subtilis str. 168	58.589	97.898	0.574
ruvB	Helicobacter pylori 26695	51.064	98.799	0.505
ruvB	Synechocystis sp. PCC 6803	50.479	93.994	0.474