Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACOAJ7_RS15600 Genome accession   NZ_CP184249
Coordinates   3429722..3431248 (+) Length   508 a.a.
NCBI ID   WP_180743828.1    Uniprot ID   A0A7V8PPR6
Organism   Pectobacterium brasiliense strain CSR3     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3424722..3436248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOAJ7_RS15580 (ACOAJ7_15580) - 3426157..3427083 (-) 927 WP_180743826.1 branched-chain amino acid transaminase -
  ACOAJ7_RS15585 (ACOAJ7_15585) ilvM 3427111..3427371 (-) 261 WP_010294673.1 acetolactate synthase 2 small subunit -
  ACOAJ7_RS15590 (ACOAJ7_15590) ilvG 3427432..3429075 (-) 1644 WP_420064516.1 acetolactate synthase 2 catalytic subunit -
  ACOAJ7_RS15595 (ACOAJ7_15595) ilvL 3429216..3429314 (-) 99 WP_071531109.1 ilv operon leader peptide -
  ACOAJ7_RS15600 (ACOAJ7_15600) comM 3429722..3431248 (+) 1527 WP_180743828.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACOAJ7_RS15605 (ACOAJ7_15605) - 3431306..3431644 (-) 339 WP_180743829.1 DUF413 domain-containing protein -
  ACOAJ7_RS15610 (ACOAJ7_15610) hdfR 3431765..3432592 (+) 828 WP_420064517.1 HTH-type transcriptional regulator HdfR -
  ACOAJ7_RS15615 (ACOAJ7_15615) yjfF 3432613..3433575 (-) 963 WP_182100878.1 galactofuranose ABC transporter, permease protein YjfF -
  ACOAJ7_RS15620 (ACOAJ7_15620) ytfT 3433575..3434585 (-) 1011 WP_420064518.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  ACOAJ7_RS15625 (ACOAJ7_15625) ytfR 3434572..3436092 (-) 1521 WP_180743833.1 galactofuranose ABC transporter, ATP-binding protein YtfR -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55366.92 Da        Isoelectric Point: 6.8235

>NTDB_id=1108061 ACOAJ7_RS15600 WP_180743828.1 3429722..3431248(+) (comM) [Pectobacterium brasiliense strain CSR3]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKSGRQLILPDDNKREMTLIPQGEALMAGHL
LDVCAFLSGEGELLSCSDIVPAPQSEEDVLDLKDIIGQDQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
DEEALESAAINSLINIDATMTRWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGIHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQRH
QGESSATIRERVLLARQIQLKRANKINALLTSREIEQHCALEAPDAAYLEEVMNKLGLSVRAWHRILKVARTIADLGDRD
NIERKHLAEALSYRSMDRLLIRLHKSLE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=1108061 ACOAJ7_RS15600 WP_180743828.1 3429722..3431248(+) (comM) [Pectobacterium brasiliense strain CSR3]
ATGTCATTGGCAGTTACCTACACTCGGGCAATGATTGGCGTACAAGCGCCGGACGTTTACATTGAAGTGCATATCAGTAG
CGGGCTACCTGCTCTGACTCTGGTAGGCTTACCAGAAACTACCGTCAAAGAAGCGCGCGATCGCGTGCGCAGCGCACTCA
TCAATTGTGGGTTTACCTTTCCAGCCAAGCGCATCACGGTCAACCTTGCTCCCGCAGACCTGCCAAAAGAAGGGGGCCGC
TACGATCTGCCGATTGCTCTGGCGATTCTGGCCGCATCAGAACAAATCGATGGGGAAAAGCTAAGCCGCTACGAGTTTCT
GGGCGAGCTTGGCCTGTCTGGCACCTTACGTGGCGTCAATGGCGCGATTCCCGCCGCTCTAGAGGCCATCAAGTCAGGCC
GCCAGCTTATCCTGCCAGATGACAACAAACGGGAGATGACGCTAATACCGCAGGGTGAGGCGCTCATGGCTGGGCATTTG
TTGGACGTGTGTGCTTTTCTTAGCGGAGAAGGGGAATTGCTCAGTTGCTCCGACATCGTACCGGCTCCGCAATCAGAAGA
AGATGTCCTCGACCTGAAGGATATCATCGGTCAGGATCAGGCTAAACGCGCGTTGGAAATCGCAGCGGCTGGCGGCCACA
ATCTGCTATTGCTGGGGCCGCCAGGAACAGGAAAAACCATGCTGGCGAGCCGATTAGGCAATCTGATGCCGCCATTAAGC
GACGAAGAAGCGCTGGAAAGCGCCGCCATCAACAGTCTCATCAACATTGATGCCACCATGACGCGTTGGCGAGCCAGACC
ATTCAGAGCGCCTCACCATAGTTCTTCCATGGCGGCGCTCGTGGGAGGAGGGTCGTTGCCTAAACCGGGGGAAATTTCAC
TCGCCCACAACGGCGTACTGTTTCTGGATGAATTACCAGAGTTTGAGCGACGCGTCCTGGATTCCCTACGAGAGCCTCTG
GAATCCGGTGAAATTATCATTTCCCGCACGCGCGCCAAAGTGTGCTACCCAGCACGCGTACAGCTCGTCGCTGCAATGAA
CCCCAGCCCGTCAGGGCACTATCAAGGCATTCATAACCGATTACCCGCACAGCAAATACTGCGCTATCTCAGCAAACTTT
CCGGTCCCTTTTTGGATCGCTTTGACCTTTCTATCGAAGTTCCTTTGCTACCACCAGGAGTTTTATCTCAGCAACGTCAT
CAGGGGGAAAGCAGCGCAACAATCCGCGAGCGCGTGCTGCTCGCACGGCAGATACAGCTGAAGCGGGCAAATAAAATCAA
CGCGCTGCTCACCTCACGCGAAATAGAACAACACTGTGCGTTAGAAGCGCCTGATGCGGCTTATCTGGAAGAAGTGATGA
ACAAACTTGGCTTATCCGTACGCGCCTGGCACCGGATATTGAAAGTCGCACGCACAATCGCAGACCTCGGCGATCGGGAC
AACATCGAGAGGAAACATCTTGCCGAAGCACTGAGCTATCGCAGTATGGATCGACTGCTCATTCGGCTCCACAAAAGCCT
TGAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7V8PPR6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

64.229

99.606

0.64
  comM Glaesserella parasuis strain SC1401

63.314

99.803

0.632
  comM Vibrio cholerae strain A1552

63.817

99.016

0.632
  comM Vibrio campbellii strain DS40M4

62.451

99.606

0.622
  comM Legionella pneumophila str. Paris

50.501

98.228

0.496
  comM Legionella pneumophila strain ERS1305867

50.501

98.228

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.14

99.803

0.47

Multiple sequence alignment