Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACN19N_RS14570 Genome accession   NZ_CP184160
Coordinates   3032324..3033802 (+) Length   492 a.a.
NCBI ID   WP_269238908.1    Uniprot ID   -
Organism   Acinetobacter sp. LF10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3027324..3038802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN19N_RS14545 (ACN19N_14545) ribD 3028230..3029330 (-) 1101 WP_420001634.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  ACN19N_RS14550 (ACN19N_14550) nrdR 3029343..3029807 (-) 465 WP_269229062.1 transcriptional regulator NrdR -
  ACN19N_RS14555 (ACN19N_14555) - 3029934..3031346 (-) 1413 WP_420001635.1 ammonium transporter -
  ACN19N_RS14560 (ACN19N_14560) glnK 3031414..3031752 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  ACN19N_RS14565 (ACN19N_14565) - 3032028..3032255 (+) 228 WP_087536529.1 accessory factor UbiK family protein -
  ACN19N_RS14570 (ACN19N_14570) comM 3032324..3033802 (+) 1479 WP_269238908.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACN19N_RS14575 (ACN19N_14575) - 3033815..3034510 (+) 696 WP_420001636.1 hypothetical protein -
  ACN19N_RS14580 (ACN19N_14580) - 3034569..3035357 (-) 789 WP_420001637.1 TorF family putative porin -
  ACN19N_RS14585 (ACN19N_14585) - 3035691..3036503 (-) 813 WP_420001638.1 TorF family putative porin -
  ACN19N_RS14590 (ACN19N_14590) - 3037229..3038554 (+) 1326 WP_420001639.1 OprD family outer membrane porin -

Sequence

Protein


Download         Length: 492 a.a.        Molecular weight: 54085.99 Da        Isoelectric Point: 7.1676

>NTDB_id=1108032 ACN19N_RS14570 WP_269238908.1 3032324..3033802(+) (comM) [Acinetobacter sp. LF10]
MSFAKIYTRGLLGLHAPQIEVEVHISSGLPSLTIVGLAEAAVRESKDRVRSAIINSGFLFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTDGFEFIGELALDGHLRPVTGILPIAMACQQAQHRLLVPTNNLEEANQLPQFEVYAANHL
QDVCAHFLGTSHLSTAPKQENLNTTQYQFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLNA
QENLEVASIYSVANAQHTFGQRPFRAPHHTASAIALVGGGSQPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRAARQMTFPANFQFIAAMNPCPCGYAFNQDSRCQCSAENIQRYQNRISGPLLDRIDLHIDVPPLQTKELQDQSPTE
SSTIVRQRVMKAYDKQMLRQQCLNQALSPNLLEQYAQLDENSAKIIEMAQQRLNLSARAYHRVLRVARTIADLAESDIIL
TTHLTEALSYRG

Nucleotide


Download         Length: 1479 bp        

>NTDB_id=1108032 ACN19N_RS14570 WP_269238908.1 3032324..3033802(+) (comM) [Acinetobacter sp. LF10]
ATGTCTTTCGCAAAAATTTACACGAGGGGTTTATTAGGTTTACATGCCCCTCAAATCGAAGTTGAAGTTCATATCAGTTC
AGGACTCCCCTCCTTAACCATTGTAGGTTTAGCAGAAGCCGCTGTAAGGGAAAGTAAAGATCGTGTTCGATCAGCAATTA
TCAACAGTGGTTTCTTGTTTCCAACCAAACGTTTAACGATTAATTTAGCACCTGCAGATCTTCCTAAAGATGGCTCCCGC
CTAGATTTACCGATCGCACTAGGAATTTTAATTGCTTCAGGTCAACTTCCTGAAAATTGTACTGACGGCTTTGAATTTAT
TGGTGAACTTGCATTAGATGGACATTTACGCCCTGTTACTGGAATATTGCCAATTGCGATGGCTTGCCAACAAGCCCAAC
ACCGCTTATTGGTTCCTACTAATAATCTAGAAGAAGCCAATCAACTTCCGCAGTTTGAAGTTTATGCTGCCAATCATTTA
CAAGATGTATGTGCACACTTTTTGGGCACTTCTCATTTATCAACTGCACCCAAACAAGAAAATTTAAACACTACTCAGTA
TCAATTTGATCTTGCAGATGTCAAAGGTCAATTACGTCCCCGTCGTGCACTAGAAATAGCAGCAGCGGGCGGACATTCTT
TACTTTTCAAAGGTCCACCTGGTACAGGTAAAACATTACTGGCTTCTCGGCTACCTTCTATTTTGCCACCACTCAATGCC
CAAGAAAATTTAGAAGTCGCAAGTATTTATTCGGTTGCAAATGCTCAACATACTTTTGGACAACGCCCCTTCCGCGCACC
ACACCATACTGCGTCAGCGATTGCATTAGTTGGAGGCGGTTCACAACCTAAACCAGGCGAAATTACACTTGCACATTTAG
GCGTATTATTTTTAGACGAATTACCTGAATTTGACCGCAAAGTTTTGGAAGTTCTCAGACAACCTCTAGAGTCGAAAGAG
ATCGTCATCTCCCGTGCGGCAAGACAAATGACATTCCCAGCGAATTTTCAATTTATTGCAGCAATGAATCCATGTCCTTG
TGGTTACGCATTTAACCAAGATAGTCGCTGCCAGTGCTCAGCAGAAAATATTCAACGCTATCAAAATCGTATCTCAGGTC
CATTACTAGATCGTATTGATTTACATATTGATGTGCCACCTTTGCAGACCAAAGAACTACAAGATCAAAGTCCGACAGAA
AGTTCTACAATTGTGCGGCAACGCGTGATGAAAGCTTATGATAAACAAATGTTAAGACAGCAATGTTTGAATCAGGCACT
TTCTCCAAATTTGCTAGAACAATATGCTCAATTAGATGAAAATTCAGCCAAAATCATCGAAATGGCTCAACAGCGACTTA
ATCTCTCAGCACGCGCCTATCATCGTGTACTTCGTGTTGCACGAACCATCGCCGACTTGGCCGAAAGCGATATCATTTTA
ACAACCCATTTAACAGAAGCCTTGTCTTATCGAGGCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.313

100

0.516
  comM Vibrio campbellii strain DS40M4

50.905

100

0.514
  comM Haemophilus influenzae Rd KW20

49.9

100

0.506
  comM Glaesserella parasuis strain SC1401

49.699

100

0.504
  comM Legionella pneumophila strain ERS1305867

49.194

100

0.496
  comM Legionella pneumophila str. Paris

49.194

100

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.476

Multiple sequence alignment