Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACGHC0_RS01525 Genome accession   NZ_AP035783
Coordinates   335203..336756 (-) Length   517 a.a.
NCBI ID   WP_107128383.1    Uniprot ID   -
Organism   Acidovorax sacchari strain HC-19     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 330203..341756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHC0_RS01510 (AVXHC19_03060) - 330572..331558 (-) 987 WP_415267245.1 tripartite tricarboxylate transporter substrate binding protein BugE -
  ACGHC0_RS01515 (AVXHC19_03070) - 331940..333763 (+) 1824 WP_415267246.1 sensor histidine kinase -
  ACGHC0_RS01520 (AVXHC19_03080) - 333794..335173 (+) 1380 WP_415267247.1 sigma-54-dependent transcriptional regulator -
  ACGHC0_RS01525 (AVXHC19_03090) comM 335203..336756 (-) 1554 WP_107128383.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACGHC0_RS01530 (AVXHC19_03100) - 337000..337725 (+) 726 WP_368353706.1 TorF family putative porin -
  ACGHC0_RS01535 (AVXHC19_03110) glnK 337778..338116 (+) 339 WP_011793419.1 P-II family nitrogen regulator -
  ACGHC0_RS01540 (AVXHC19_03120) - 338169..339617 (+) 1449 WP_415267248.1 ammonium transporter -
  ACGHC0_RS01545 (AVXHC19_03130) - 339879..340862 (+) 984 WP_368353708.1 SMP-30/gluconolactonase/LRE family protein -

Sequence

Protein


Download         Length: 517 a.a.        Molecular weight: 53744.43 Da        Isoelectric Point: 8.0370

>NTDB_id=110791 ACGHC0_RS01525 WP_107128383.1 335203..336756(-) (comM) [Acidovorax sacchari strain HC-19]
MSLALVQSRALLGLQAAAVTVEVHLANGLPSFTLVGLADVEVKEARERVRSALQNAGLEFPHNKKITVNLAPADLPKDSG
RFDLPIALGILAASGQIDGTLLAGHEFAGELSLSGELRPVRGALATSLALRSAGGRARMVLPPGSAEEAALVPGTEVYRA
RHLLDVVARFLPPQAAASAGAGPDIGTEDGWCRVEGMPPMAAAPADDLADVKGQAAARRALEIAAAGGHGLLMVGPPGSG
KSMLAHRFAGLLPAMSVDEALESAAVASLAGRFTPTAWGARPTAAPHHSCSAVALVGGGSPPRPGEISIAHHGVLFLDEF
PEYARSALEALREPLETGRITIARAARRADFPARFQLVAAMNPCPCGYLGSGQRACRCTPDQIDRYQAKLSGPLLDRIDL
HVEVPALPADQLLAAAPGEPSASVRERVAAARERALARQGKPNQALQGREIDVQAGLQDDAARFLQSAAARLGWSARSTH
RTLKVARTIADLAGDASVGPAHVAEAVQYRRVLRQAA

Nucleotide


Download         Length: 1554 bp        

>NTDB_id=110791 ACGHC0_RS01525 WP_107128383.1 335203..336756(-) (comM) [Acidovorax sacchari strain HC-19]
ATGAGTCTTGCCTTGGTGCAGAGCCGCGCATTGCTGGGCCTGCAGGCCGCGGCCGTCACGGTGGAAGTGCATCTGGCCAA
CGGCCTGCCGAGCTTCACGCTCGTGGGCCTGGCGGACGTGGAAGTGAAGGAAGCGCGCGAGCGCGTGCGCTCGGCACTGC
AGAACGCGGGGCTGGAATTCCCCCACAACAAGAAGATCACCGTCAACCTGGCTCCGGCTGATCTTCCCAAGGACTCCGGC
CGCTTCGACCTGCCGATCGCCCTGGGCATCCTGGCCGCCAGCGGCCAGATCGACGGCACGCTGCTGGCCGGCCATGAGTT
CGCGGGCGAGCTGTCGCTCTCCGGCGAACTGCGCCCGGTGCGGGGCGCACTCGCCACCAGCCTCGCCCTGCGCTCCGCCG
GGGGCCGCGCCCGCATGGTGCTGCCGCCCGGCAGCGCCGAAGAAGCGGCCCTGGTGCCCGGCACCGAGGTGTACCGGGCC
CGGCACCTGCTGGACGTGGTGGCGCGGTTCCTTCCTCCCCAGGCCGCGGCCAGCGCCGGGGCGGGCCCCGACATCGGTAC
CGAGGACGGCTGGTGCCGGGTGGAGGGCATGCCGCCGATGGCCGCAGCCCCCGCCGACGATCTCGCCGACGTGAAGGGCC
AGGCCGCCGCCCGGCGCGCGCTGGAGATCGCCGCCGCAGGCGGCCACGGCCTGCTCATGGTGGGCCCGCCGGGCTCGGGC
AAGTCGATGCTGGCGCACCGGTTCGCGGGCCTGCTGCCGGCCATGTCCGTGGACGAGGCGCTGGAAAGCGCCGCGGTGGC
CAGCCTGGCCGGGCGCTTCACGCCGACCGCATGGGGTGCCAGGCCGACGGCTGCGCCACACCACTCCTGCAGTGCGGTGG
CTCTGGTGGGAGGGGGGTCACCCCCGCGCCCCGGAGAAATCTCGATCGCCCACCACGGAGTGCTCTTCCTGGACGAATTC
CCCGAGTACGCCCGCAGCGCCCTGGAAGCGCTGCGCGAGCCGCTGGAGACGGGCCGCATCACGATCGCACGGGCCGCACG
CCGCGCGGATTTCCCGGCGCGCTTCCAGCTCGTCGCGGCGATGAACCCCTGCCCCTGCGGCTACCTGGGCTCCGGCCAGC
GTGCCTGCCGCTGCACGCCCGACCAGATCGACCGCTACCAGGCCAAGCTGAGCGGCCCGCTGCTGGACCGCATCGATCTG
CATGTGGAGGTGCCCGCCCTCCCCGCGGACCAGTTGCTGGCCGCCGCGCCCGGCGAACCGTCGGCCAGCGTGCGGGAGCG
CGTCGCCGCCGCGCGCGAGCGCGCCCTGGCCCGCCAGGGCAAGCCCAACCAGGCCCTGCAGGGGCGCGAGATCGACGTGC
AGGCCGGCCTGCAGGACGATGCCGCCCGGTTCCTGCAGTCCGCCGCCGCCCGGCTGGGATGGTCGGCGCGCAGCACCCAC
CGCACGCTCAAGGTGGCACGCACCATCGCCGACCTGGCGGGCGATGCTTCCGTCGGGCCCGCGCACGTGGCCGAAGCGGT
GCAGTACCGGCGCGTGCTGCGCCAGGCCGCGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(418-510)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(207-410)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.207

100

0.526
  comM Vibrio campbellii strain DS40M4

51.631

100

0.52
  comM Haemophilus influenzae Rd KW20

51.451

100

0.515
  comM Glaesserella parasuis strain SC1401

50.584

99.42

0.503
  comM Legionella pneumophila str. Paris

47.582

100

0.476
  comM Legionella pneumophila strain ERS1305867

47.582

100

0.476
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.683

100

0.422

Multiple sequence alignment