Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACGJAX_RS02040 Genome accession   NZ_AP035776
Coordinates   422147..423484 (+) Length   445 a.a.
NCBI ID   WP_390957300.1    Uniprot ID   -
Organism   Pseudomonas moorei strain m318     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 417147..428484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGJAX_RS02015 (PMm318_A03820) pgeF 417350..418069 (-) 720 WP_090325248.1 peptidoglycan editing factor PgeF -
  ACGJAX_RS02020 (PMm318_A03830) rluD 418066..419028 (-) 963 WP_090325250.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACGJAX_RS02025 (PMm318_A03840) - 419180..420202 (+) 1023 WP_390957298.1 outer membrane protein assembly factor BamD -
  ACGJAX_RS02030 (PMm318_A03850) - 420338..420571 (+) 234 WP_090325254.1 PP0621 family protein -
  ACGJAX_RS02035 (PMm318_A03860) pilS 420561..422150 (+) 1590 WP_390957299.1 ATP-binding protein Regulator
  ACGJAX_RS02040 (PMm318_A03870) pilR 422147..423484 (+) 1338 WP_390957300.1 sigma 54-interacting transcriptional regulator Regulator
  ACGJAX_RS02045 (PMm318_A03880) thiO 423503..424603 (-) 1101 WP_390957301.1 glycine oxidase ThiO -
  ACGJAX_RS02050 (PMm318_A03890) - 424661..425062 (-) 402 WP_090325261.1 type IV pilin protein -
  ACGJAX_RS02055 (PMm318_A03900) - 425077..425493 (-) 417 WP_390957302.1 hypothetical protein -
  ACGJAX_RS02060 (PMm318_A03910) - 425480..425959 (-) 480 WP_390957303.1 PilX N-terminal domain-containing pilus assembly protein -
  ACGJAX_RS02065 (PMm318_A03920) - 425971..426684 (-) 714 WP_390957304.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ACGJAX_RS02070 (PMm318_A03930) pilV 426681..427130 (-) 450 WP_390957305.1 type IV pilus modification protein PilV -
  ACGJAX_RS02075 (PMm318_A03940) - 427127..427600 (-) 474 WP_090325271.1 GspH/FimT family pseudopilin -
  ACGJAX_RS02080 (PMm318_A03950) - 427731..428282 (+) 552 WP_390957306.1 GspH/FimT family pseudopilin -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49894.46 Da        Isoelectric Point: 7.2160

>NTDB_id=110768 ACGJAX_RS02040 WP_390957300.1 422147..423484(+) (pilR) [Pseudomonas moorei strain m318]
MNKRPRQKVLIVDDEPDIRELLEITLGRMKLHTCGARNVGEALGLLKRETFDLCLTDMRLPDGTGLELVQHIQQRYPQVP
VAMITAFGNVETAINALKAGAFDFLSKPVDLGRLRELVTSTLLLAVPGNAIDRRLLGDSLPMRDLRKQIDKLARSQAPVY
ISGESGSGKELVARLIHERGPRGHRPFVPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRSVGGQQEEMVDVRILCATHKDLSAEVAAERFRQDLYYRLNVIELRVPPLRERRDDIEPLASHV
LMRLAADTGQPAATLHPQALDALKNYRFPGNVRELENMLERAHTLCENKQIEASDLRLAEGNCAAEAGLRDLTQIDNLEA
YLENVERQLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKFGLD

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=110768 ACGJAX_RS02040 WP_390957300.1 422147..423484(+) (pilR) [Pseudomonas moorei strain m318]
TTGAACAAGAGACCACGGCAAAAAGTCCTGATCGTCGACGACGAACCGGACATCCGCGAACTCCTTGAAATTACCCTGGG
ACGGATGAAACTCCACACCTGCGGCGCCCGCAATGTTGGCGAGGCCCTGGGTCTGCTCAAGCGCGAAACGTTCGACCTGT
GCCTGACCGACATGCGCTTGCCGGACGGTACCGGTCTTGAGCTGGTGCAGCACATCCAGCAACGTTACCCGCAAGTTCCG
GTGGCCATGATCACCGCCTTCGGCAATGTCGAAACGGCGATCAATGCACTGAAGGCCGGCGCCTTCGACTTCCTGAGCAA
ACCGGTGGACCTTGGCCGCCTGCGGGAACTGGTCACCAGCACCTTGCTGCTTGCTGTTCCCGGCAATGCCATCGATCGTC
GCCTGCTGGGCGATTCGTTGCCCATGCGCGACCTGCGCAAGCAGATCGACAAACTGGCGCGCAGCCAGGCGCCGGTGTAC
ATCAGCGGCGAGTCAGGCAGCGGCAAGGAATTGGTCGCGCGCCTGATCCATGAGCGAGGACCGCGGGGCCACCGCCCCTT
TGTGCCGGTCAACTGTGGGGCGATTCCATCGGAACTGATGGAGAGCGAGTTCTTCGGCCATCGCAAAGGCAGCTTCAGCG
GTGCCATTGAAGACAAACCCGGACTGTTCCAGGCGGCCCACGGCGGCACCCTGTTTCTCGACGAAGTGGCTGATCTGCCG
TTGCCGATGCAGGTCAAACTGCTACGCGCGATTCAGGAAAAAGCCGTGCGCAGCGTCGGCGGGCAACAGGAAGAGATGGT
CGATGTGCGCATCCTCTGCGCCACCCACAAGGATCTCTCTGCCGAAGTCGCTGCCGAACGCTTTCGCCAGGATTTGTACT
ATCGCTTGAATGTCATTGAACTGCGGGTTCCGCCCCTGCGCGAGCGCCGCGACGACATAGAACCACTTGCCAGCCATGTG
CTCATGCGCCTGGCCGCCGACACCGGGCAACCGGCAGCAACACTCCACCCGCAAGCCCTCGACGCGCTGAAAAACTACCG
CTTTCCAGGCAATGTGCGCGAACTTGAAAACATGCTCGAACGAGCCCACACCCTGTGCGAAAACAAACAGATCGAGGCCA
GCGACCTGCGCCTGGCCGAGGGCAACTGCGCCGCTGAAGCGGGCTTGCGTGACCTGACACAGATCGACAACCTGGAAGCG
TACCTGGAAAACGTCGAGCGCCAGCTCATTCTCCAGGCCCTGGAAGAAACCCGCTGGAACCGCACGGCAGCAGCTCAGCG
GTTGAATTTATCGTTTCGGTCGATGCGCTACCGATTGAAGAAATTCGGCCTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.104

99.551

0.778
  pilR Acinetobacter baumannii strain A118

49.783

100

0.515
  luxO Vibrio cholerae strain A1552

38.425

94.157

0.362

Multiple sequence alignment