Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ACGJAX_RS02035 Genome accession   NZ_AP035776
Coordinates   420561..422150 (+) Length   529 a.a.
NCBI ID   WP_390957299.1    Uniprot ID   -
Organism   Pseudomonas moorei strain m318     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 415561..427150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGJAX_RS02015 (PMm318_A03820) pgeF 417350..418069 (-) 720 WP_090325248.1 peptidoglycan editing factor PgeF -
  ACGJAX_RS02020 (PMm318_A03830) rluD 418066..419028 (-) 963 WP_090325250.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACGJAX_RS02025 (PMm318_A03840) - 419180..420202 (+) 1023 WP_390957298.1 outer membrane protein assembly factor BamD -
  ACGJAX_RS02030 (PMm318_A03850) - 420338..420571 (+) 234 WP_090325254.1 PP0621 family protein -
  ACGJAX_RS02035 (PMm318_A03860) pilS 420561..422150 (+) 1590 WP_390957299.1 ATP-binding protein Regulator
  ACGJAX_RS02040 (PMm318_A03870) pilR 422147..423484 (+) 1338 WP_390957300.1 sigma 54-interacting transcriptional regulator Regulator
  ACGJAX_RS02045 (PMm318_A03880) thiO 423503..424603 (-) 1101 WP_390957301.1 glycine oxidase ThiO -
  ACGJAX_RS02050 (PMm318_A03890) - 424661..425062 (-) 402 WP_090325261.1 type IV pilin protein -
  ACGJAX_RS02055 (PMm318_A03900) - 425077..425493 (-) 417 WP_390957302.1 hypothetical protein -
  ACGJAX_RS02060 (PMm318_A03910) - 425480..425959 (-) 480 WP_390957303.1 PilX N-terminal domain-containing pilus assembly protein -
  ACGJAX_RS02065 (PMm318_A03920) - 425971..426684 (-) 714 WP_390957304.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ACGJAX_RS02070 (PMm318_A03930) pilV 426681..427130 (-) 450 WP_390957305.1 type IV pilus modification protein PilV -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58827.79 Da        Isoelectric Point: 6.7794

>NTDB_id=110767 ACGJAX_RS02035 WP_390957299.1 420561..422150(+) (pilS) [Pseudomonas moorei strain m318]
MTAEAPHTGSNQAQRLLRLYHLYRLSVGIILVLLISSDMDNQLLTSSHDALLRGGSWLYLILNILLVVFFENTRRPAQLF
SLALVDVLLLCALFYAAGGVASAIGNLLIVSVAISNTLLRERIGLLIAAVGALGIVGLSILLSFSHPASPSDYAQVGILG
TLCFAAALFVQGLTRRLEFSENLAEQRASEVIGLETLNALILQRMRTGILVLDEHRRVQLANHSALALFGCEGLEGHLID
EHCPSLVERLVLWRNNPTLRPHCVKITNSGLELRPSFITLDTGPNRRTLVFLEDLAQITQQAQQLKLVALGRLTAGIAHE
IRNPLGAISHAAQLLQESEELNSGDRRLTQIIQDHSERMNRVIENVLQLSRRQQTLPQRLDLMPWLERFVGETREAATGR
QQIHLHITGADFKTLMDPDQLRQVLDNLVGNAWRHSGLHREQAQVWLELFIDPISQLPILEIVDDGPGVPSDDQAHLFEP
FFTTRQNGTGLGLYLSRELCESNQARLDFKPRQEGGCFRITFAHGRKQG

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=110767 ACGJAX_RS02035 WP_390957299.1 420561..422150(+) (pilS) [Pseudomonas moorei strain m318]
GTGACCGCTGAGGCACCCCATACCGGCAGCAACCAGGCCCAGCGACTCCTGCGCCTGTATCACCTCTACCGTTTGAGCGT
CGGCATCATCCTGGTGCTGTTGATTTCCAGCGACATGGACAATCAGTTGCTGACGTCCAGCCACGACGCGTTGCTGCGCG
GCGGCAGCTGGCTGTACCTGATACTGAACATTCTGCTGGTGGTGTTCTTCGAGAACACCCGTCGTCCGGCGCAATTGTTC
AGCCTGGCGTTGGTTGACGTCCTGCTGCTGTGCGCTCTGTTCTATGCCGCGGGCGGTGTGGCCAGTGCCATTGGCAACCT
GTTGATCGTGTCCGTGGCCATCAGCAACACCCTGTTGCGAGAGCGAATCGGCTTGCTGATCGCTGCGGTCGGTGCGCTCG
GCATCGTCGGCTTGAGTATCCTGCTGAGCTTCAGCCATCCCGCCAGTCCCAGCGATTACGCGCAGGTCGGCATCCTCGGC
ACCCTGTGCTTTGCAGCGGCCTTGTTCGTGCAAGGACTCACCCGACGCCTGGAATTCAGCGAAAACCTCGCCGAACAAAG
AGCCAGTGAAGTCATCGGCCTGGAAACCCTCAATGCACTGATCCTGCAACGCATGCGCACCGGCATTCTGGTGCTCGACG
AGCACAGACGGGTACAGCTTGCCAACCACAGCGCCTTGGCACTGTTCGGTTGCGAGGGTCTCGAGGGCCATCTGATTGAC
GAGCACTGCCCTTCCCTGGTCGAGCGCCTGGTCCTTTGGCGCAACAATCCGACGCTGCGCCCCCACTGCGTGAAGATCAC
CAATAGCGGTCTGGAGCTGCGCCCAAGCTTCATCACCCTGGACACCGGCCCGAACCGCCGGACCCTGGTCTTTCTCGAAG
ATCTCGCCCAGATCACGCAGCAGGCACAACAATTGAAGCTGGTCGCCCTTGGTCGCCTGACCGCCGGCATCGCCCATGAA
ATCCGCAACCCGCTGGGCGCCATCAGTCATGCTGCGCAGCTATTGCAAGAATCGGAGGAACTGAACAGCGGGGATCGGCG
TCTGACGCAGATTATTCAAGACCACTCTGAGCGAATGAATCGGGTAATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AAACTCTACCGCAACGGCTCGACTTGATGCCGTGGCTGGAACGGTTCGTGGGCGAAACCCGCGAGGCAGCAACCGGGCGC
CAGCAGATTCACTTGCACATCACTGGCGCGGACTTCAAGACGCTGATGGATCCCGACCAATTGCGGCAGGTTCTCGACAA
CCTGGTGGGCAACGCCTGGCGCCACAGTGGCTTGCACCGCGAGCAGGCGCAGGTCTGGCTTGAATTGTTCATTGATCCAA
TTAGCCAGTTGCCGATCCTGGAAATTGTCGATGACGGTCCTGGCGTGCCCTCGGATGATCAAGCACACCTGTTCGAACCC
TTCTTCACCACCCGTCAGAATGGCACTGGCCTGGGTCTCTACCTGTCCCGTGAGCTGTGCGAAAGCAATCAGGCCCGCCT
GGACTTCAAGCCACGCCAGGAGGGCGGCTGCTTTCGCATTACCTTTGCTCACGGACGGAAACAAGGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

58.902

99.811

0.588

Multiple sequence alignment