Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   ACLKM0_RS12925 Genome accession   NZ_CP183907
Coordinates   2687700..2688842 (+) Length   380 a.a.
NCBI ID   WP_286392080.1    Uniprot ID   -
Organism   Acinetobacter indicus strain M3_NDM     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 2682700..2693842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM0_RS12905 - 2683244..2685295 (-) 2052 WP_411689230.1 TonB-dependent copper receptor -
  ACLKM0_RS12910 - 2685369..2685791 (-) 423 WP_016658991.1 DUF2946 family protein -
  ACLKM0_RS12915 def 2685882..2686406 (-) 525 WP_005181462.1 peptide deformylase -
  ACLKM0_RS12920 tsaP 2686526..2687683 (+) 1158 WP_168384812.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ACLKM0_RS12925 dprA 2687700..2688842 (+) 1143 WP_286392080.1 DNA-processing protein DprA Machinery gene
  ACLKM0_RS12930 - 2688887..2689453 (+) 567 WP_005181449.1 L-threonylcarbamoyladenylate synthase -
  ACLKM0_RS12935 - 2689610..2689762 (+) 153 WP_228152267.1 hypothetical protein -
  ACLKM0_RS12940 - 2689833..2690744 (-) 912 WP_005181447.1 DMT family transporter -
  ACLKM0_RS12945 - 2691073..2691615 (+) 543 WP_005181445.1 glutathione peroxidase -
  ACLKM0_RS12950 - 2691798..2692406 (+) 609 WP_411689231.1 hypothetical protein -
  ACLKM0_RS12955 - 2692527..2693525 (+) 999 WP_411689232.1 pirin family protein -

Sequence


Protein


Download         Length: 380 a.a.        Molecular weight: 42134.96 Da        Isoelectric Point: 6.8487

>NTDB_id=1107145 ACLKM0_RS12925 WP_286392080.1 2687700..2688842(+) (dprA) [Acinetobacter indicus strain M3_NDM]
MLNTISPGHLATIRLWYLVQHSLPSFYKLIRHFGSAAAATEAGNLQRWAELGLHQNHLQRARDFHQAQAQADFQHLLQRV
QQYTDFILIPEDVGYPTQLLPYTDKPPILFGQGQAQPLLQPQVAIVGSRKASPHGRQVAYDFAYYLSEKGFFINSGLAQG
IDEAAHQGGLKHQRTIAVMGTGLDLTYPATHQGLRDQILQQHGTIISEFLPQTKPLQQHFPRRNRIVSGLSLGVIVAEAT
LDSGSLITAKLAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQVIEDLALPTQWLSQQQATLSATASAAAHPT
LPEHLLALYSQLDWVGKNMDQLASELQQETAHLTAQLMELELLGMAMQQSGLYLRCRPSQ

Nucleotide


Download         Length: 1143 bp        

>NTDB_id=1107145 ACLKM0_RS12925 WP_286392080.1 2687700..2688842(+) (dprA) [Acinetobacter indicus strain M3_NDM]
ATGCTGAATACGATATCACCCGGTCATCTCGCAACGATTCGCCTGTGGTATCTGGTTCAGCATTCACTCCCCAGCTTTTA
TAAATTAATCCGGCACTTCGGTTCGGCCGCTGCGGCCACCGAAGCCGGCAACCTGCAGCGCTGGGCAGAACTGGGACTGC
ATCAGAACCATCTGCAACGCGCACGGGATTTTCATCAAGCACAGGCACAAGCCGACTTCCAGCACTTGCTGCAGCGCGTC
CAGCAATATACCGATTTTATTCTTATTCCCGAAGATGTCGGTTACCCCACCCAACTGCTGCCCTATACCGATAAGCCACC
AATTTTATTTGGTCAGGGACAGGCGCAACCTTTACTTCAGCCGCAAGTGGCAATTGTTGGGAGTCGCAAAGCCAGTCCGC
ATGGCCGGCAGGTGGCTTATGACTTTGCCTATTATTTAAGTGAAAAAGGCTTTTTTATTAACAGTGGCCTGGCGCAAGGC
ATTGATGAAGCAGCCCATCAGGGTGGACTAAAACATCAACGTACCATTGCTGTGATGGGTACTGGCCTCGACCTCACCTA
CCCAGCCACACATCAGGGCCTGCGTGACCAGATTCTGCAACAGCATGGCACTATTATCAGTGAGTTCCTGCCCCAGACTA
AACCGCTACAGCAGCATTTTCCACGGCGCAACCGCATTGTCAGTGGACTTAGCCTGGGAGTAATTGTGGCCGAAGCCACG
CTGGACAGTGGCTCGCTGATTACCGCCAAACTGGCAGCTGAACAGGGCAAAACCGTGTTTGCCATTCCCGGTCATATCTA
CAGTGAATTTCATCAGGGCTGCCATCAACTGATTCGGGAAGGTGCAATTCTGGTCGATCATCCGGAACAGGTCATTGAAG
ATCTGGCCTTGCCAACCCAATGGCTGAGCCAGCAGCAGGCGACCTTATCCGCTACAGCATCTGCAGCTGCCCACCCGACC
TTACCCGAACATCTGTTGGCCCTATACAGCCAGCTGGACTGGGTCGGTAAAAACATGGACCAGCTGGCCAGCGAACTGCA
ACAGGAAACCGCCCATTTAACCGCTCAGTTAATGGAACTGGAGCTGCTCGGGATGGCAATGCAGCAATCGGGGCTATATC
TGCGTTGTCGTCCATCGCAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

69.496

99.211

0.689

  dprA Acinetobacter baumannii D1279779

69.496

99.211

0.689

  dprA Acinetobacter baylyi ADP1

64.211

100

0.642

  dprA Vibrio cholerae strain A1552

43.155

88.421

0.382


Multiple sequence alignment