Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   ACLKM0_RS12920 Genome accession   NZ_CP183907
Coordinates   2686526..2687683 (+) Length   385 a.a.
NCBI ID   WP_168384812.1    Uniprot ID   -
Organism   Acinetobacter indicus strain M3_NDM     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2681526..2692683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM0_RS12905 - 2683244..2685295 (-) 2052 WP_411689230.1 TonB-dependent copper receptor -
  ACLKM0_RS12910 - 2685369..2685791 (-) 423 WP_016658991.1 DUF2946 family protein -
  ACLKM0_RS12915 def 2685882..2686406 (-) 525 WP_005181462.1 peptide deformylase -
  ACLKM0_RS12920 tsaP 2686526..2687683 (+) 1158 WP_168384812.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ACLKM0_RS12925 dprA 2687700..2688842 (+) 1143 WP_286392080.1 DNA-processing protein DprA Machinery gene
  ACLKM0_RS12930 - 2688887..2689453 (+) 567 WP_005181449.1 L-threonylcarbamoyladenylate synthase -
  ACLKM0_RS12935 - 2689610..2689762 (+) 153 WP_228152267.1 hypothetical protein -
  ACLKM0_RS12940 - 2689833..2690744 (-) 912 WP_005181447.1 DMT family transporter -
  ACLKM0_RS12945 - 2691073..2691615 (+) 543 WP_005181445.1 glutathione peroxidase -
  ACLKM0_RS12950 - 2691798..2692406 (+) 609 WP_411689231.1 hypothetical protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 42522.52 Da        Isoelectric Point: 8.5533

>NTDB_id=1107144 ACLKM0_RS12920 WP_168384812.1 2686526..2687683(+) (tsaP) [Acinetobacter indicus strain M3_NDM]
MKKVLKGTSSFRALGLKQQALALAVCFSFGVGAVSTVQAAPARNINPPTLQANAPNVYVVKKGDTLWDISKKFLQNPLRW
REIWASNKHVKNPHWIFPGDRLLMCTYDGRPIIGKDEGDGCEGIIRRYTGDTTSLQPQIRVESLNNTIPVIPLEYIQHWL
ERTSIIAPESLQQTPYILGTADQRVLAAKGQNVYARGQGLQVGQRYAVYREGEPYIFTDANGKKYNAGLELTQVASGIAV
RGENDITTLELTDTYNAEVRRGDRVLPEYDPMLPTLFYPTNAEHIAADGQVVRVMGSIGTAAKHSVVTIDRGQAHGVQSG
HVFAVTQKGEVVTDPKTRERVQLPGERIGYAMVFKTFDQLSYAYILDSELPIKVGAGIQPPIMED

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=1107144 ACLKM0_RS12920 WP_168384812.1 2686526..2687683(+) (tsaP) [Acinetobacter indicus strain M3_NDM]
ATGAAAAAGGTTTTGAAGGGCACATCTTCTTTTCGTGCCTTGGGGTTAAAACAGCAGGCGCTGGCACTTGCTGTCTGTTT
CAGTTTTGGGGTGGGCGCAGTCAGTACTGTACAGGCCGCACCGGCACGCAATATCAACCCACCGACCTTACAGGCCAATG
CACCAAATGTGTATGTGGTGAAAAAAGGCGATACGCTGTGGGATATTTCCAAGAAGTTTCTGCAAAACCCGCTGCGCTGG
CGTGAAATCTGGGCCAGCAACAAGCACGTGAAAAATCCGCACTGGATTTTCCCGGGAGATCGCCTGCTGATGTGTACCTA
TGATGGTCGCCCGATCATTGGTAAAGATGAAGGTGATGGCTGTGAAGGCATTATCCGTCGTTATACCGGCGACACCACCA
GCCTGCAGCCGCAAATCCGGGTTGAATCGCTCAACAATACCATTCCGGTAATTCCGTTAGAGTACATCCAGCACTGGCTG
GAACGTACCAGCATTATTGCCCCTGAATCTTTGCAACAGACGCCTTATATTTTAGGCACGGCGGATCAGCGTGTCCTGGC
GGCCAAAGGCCAGAATGTCTATGCCCGCGGTCAGGGTCTGCAAGTTGGCCAGCGTTATGCTGTGTATCGTGAAGGCGAAC
CGTATATCTTCACCGATGCCAACGGTAAAAAATACAATGCCGGTCTGGAGCTGACTCAGGTTGCATCCGGTATTGCAGTA
CGCGGTGAAAATGATATTACCACCCTGGAACTGACCGATACCTACAATGCCGAAGTGCGTCGTGGCGATCGTGTGCTGCC
AGAATATGACCCGATGTTACCAACCCTATTCTACCCGACCAATGCCGAACACATTGCAGCAGATGGCCAGGTGGTACGCG
TGATGGGTTCAATTGGTACCGCAGCTAAACACAGTGTGGTCACCATTGACCGTGGTCAGGCGCACGGCGTGCAATCCGGT
CATGTATTTGCTGTAACTCAAAAAGGCGAAGTGGTCACCGATCCGAAAACCCGTGAACGGGTGCAGCTGCCAGGCGAGCG
TATTGGCTATGCCATGGTCTTTAAAACCTTTGACCAGCTCAGCTATGCCTATATTCTGGACAGCGAACTACCAATTAAAG
TCGGGGCCGGTATTCAGCCACCGATTATGGAAGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

66.234

100

0.662

Multiple sequence alignment