Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACLKM0_RS12765 Genome accession   NZ_CP183907
Coordinates   2648450..2649940 (+) Length   496 a.a.
NCBI ID   WP_075167834.1    Uniprot ID   A0A6C0Y5K8
Organism   Acinetobacter indicus strain M3_NDM     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2643450..2654940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM0_RS12740 ribD 2644362..2645450 (-) 1089 WP_411689029.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  ACLKM0_RS12745 nrdR 2645474..2645932 (-) 459 WP_005181550.1 transcriptional regulator NrdR -
  ACLKM0_RS12750 - 2646072..2647475 (-) 1404 WP_075174920.1 ammonium transporter -
  ACLKM0_RS12755 glnK 2647538..2647876 (-) 339 WP_004650081.1 P-II family nitrogen regulator -
  ACLKM0_RS12760 - 2648153..2648380 (+) 228 WP_005181545.1 accessory factor UbiK family protein -
  ACLKM0_RS12765 comM 2648450..2649940 (+) 1491 WP_075167834.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACLKM0_RS12770 - 2650014..2650775 (-) 762 WP_045795372.1 TorF family putative porin -
  ACLKM0_RS12775 - 2651535..2652836 (+) 1302 WP_411689028.1 OprD family outer membrane porin -
  ACLKM0_RS12780 ppa 2652939..2653463 (-) 525 WP_005181532.1 inorganic diphosphatase -
  ACLKM0_RS12785 - 2653581..2653982 (-) 402 WP_005181530.1 MAPEG family protein -
  ACLKM0_RS12790 - 2654086..2654466 (+) 381 WP_104470544.1 hypothetical protein -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 54061.02 Da        Isoelectric Point: 7.5671

>NTDB_id=1107143 ACLKM0_RS12765 WP_075167834.1 2648450..2649940(+) (comM) [Acinetobacter indicus strain M3_NDM]
MSFAKIYTRGLLGLNAPSIEVEVHLSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPEQAAENLEFIGELALDGQLRPVTGTLSIAIACQAAGHQLVLPEPNAQEAAQLPDFQVFAASHL
KQVCEHLAQAAPLQPFAASSETRLERYAFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLASILPPLNM
QENLEVASIYSIANTPHRFGQRPFRAPHHTASAIALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPASFQLIAAMNPCPCGYAFNQDIRCQCSAESIKRYQNRISGPLLDRIDLHIDVPPLQAHELHDKTAVE
NSDTVRQRVIQAYERQMQRQGMLNMNLSPKQLEQFAALATPAQNMMDLAQQRLNLSARAYHRVLRVARSIADLAESSEIQ
TAHLSEALSYRAQSSP

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=1107143 ACLKM0_RS12765 WP_075167834.1 2648450..2649940(+) (comM) [Acinetobacter indicus strain M3_NDM]
ATGTCTTTTGCCAAAATTTATACGCGGGGTCTGCTTGGACTGAATGCCCCGTCCATTGAAGTTGAAGTCCATTTAAGTCA
GGGTCTGCCCTCCTTAACCATTGTCGGTCTGGCCGAAGCCGCGGTCCGTGAAAGTAAAGACCGGGTTCGCTCGGCCATTA
TTAACAGTGGTTTTCAGTTTCCCACCAAACGTTTGACCATTAATCTGGCCCCGGCCGATTTACCCAAAGATGGCTCACGT
CTGGATTTACCGATTGCCTTAGGCATTCTGATTGCTTCCGGACAATTGCCCGAACAGGCCGCAGAAAACCTGGAATTTAT
TGGTGAACTGGCGCTGGATGGCCAGTTACGCCCGGTCACCGGCACTTTAAGTATTGCCATTGCCTGTCAGGCGGCCGGCC
ATCAACTGGTATTACCGGAACCCAATGCACAGGAAGCCGCACAATTGCCCGACTTTCAGGTGTTTGCGGCCAGTCATCTG
AAACAGGTCTGTGAGCATCTGGCGCAGGCTGCGCCCCTACAGCCTTTTGCAGCAAGCTCGGAAACCCGCTTGGAACGCTA
TGCTTTTGACCTGGCTGATGTCAAAGGACAGCTGCGACCTCGGCGTGCCCTGGAAATTGCCGCTGCCGGTGGCCATTCCT
TGCTCTTTAAAGGTCCACCCGGTACAGGCAAGACTCTCTTGGCCTCACGTCTGGCCAGTATTTTGCCGCCCCTGAATATG
CAGGAAAATCTTGAAGTTGCCAGTATTTATTCAATTGCCAATACCCCGCATCGCTTTGGACAGCGGCCATTTCGCGCCCC
GCATCATACCGCTTCAGCGATTGCGCTGGTCGGTGGTGGCTCACATCCAAAACCGGGCGAAATTACCCTGGCCCATTTAG
GTGTGCTGTTTTTAGATGAACTGCCGGAGTTTGACCGTAAAGTGCTGGAAGTATTGCGGCAGCCCTTGGAATCCAAGGAA
ATTGTAATTTCCCGGGCATCGCGGCAGATTACCTTTCCGGCCAGTTTCCAGCTGATTGCCGCGATGAACCCCTGCCCGTG
TGGCTATGCGTTTAATCAGGATATTCGCTGCCAATGTTCCGCAGAAAGTATTAAACGCTACCAGAACCGGATTTCTGGCC
CACTCCTGGACCGGATTGATTTGCATATTGATGTACCACCATTACAGGCCCATGAGTTACATGATAAAACTGCGGTGGAA
AACTCAGATACGGTTCGCCAGCGGGTGATTCAGGCCTATGAACGGCAAATGCAACGCCAAGGTATGCTGAATATGAACTT
AAGTCCAAAACAGCTGGAACAGTTTGCTGCCTTAGCCACACCAGCACAGAACATGATGGATCTGGCCCAGCAGCGCTTAA
ACCTGTCGGCTCGCGCCTATCATCGGGTCTTAAGAGTGGCGCGCAGTATTGCCGATTTGGCCGAAAGTAGCGAGATTCAA
ACTGCTCATTTATCGGAAGCGCTGTCTTATCGGGCGCAGTCCAGCCCATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6C0Y5K8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.806

100

0.508
  comM Legionella pneumophila str. Paris

50.806

100

0.508
  comM Legionella pneumophila strain ERS1305867

50.806

100

0.508
  comM Haemophilus influenzae Rd KW20

49.9

100

0.504
  comM Vibrio campbellii strain DS40M4

50.202

100

0.502
  comM Glaesserella parasuis strain SC1401

49.8

100

0.502
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.047

100

0.47

Multiple sequence alignment