Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACLKM1_RS12380 Genome accession   NZ_CP183903
Coordinates   2580197..2581687 (+) Length   496 a.a.
NCBI ID   WP_218208705.1    Uniprot ID   -
Organism   Acinetobacter pseudolwoffii strain M5_NDM     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2575197..2586687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM1_RS12355 ribD 2576117..2577205 (-) 1089 WP_005169044.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  ACLKM1_RS12360 nrdR 2577208..2577672 (-) 465 WP_005094481.1 transcriptional regulator NrdR -
  ACLKM1_RS12365 - 2577812..2579227 (-) 1416 WP_180191236.1 ammonium transporter -
  ACLKM1_RS12370 glnK 2579287..2579625 (-) 339 WP_005094485.1 P-II family nitrogen regulator -
  ACLKM1_RS12375 - 2579903..2580130 (+) 228 WP_005094487.1 accessory factor UbiK family protein -
  ACLKM1_RS12380 comM 2580197..2581687 (+) 1491 WP_218208705.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACLKM1_RS12385 - 2581735..2582466 (-) 732 WP_411689657.1 TorF family putative porin -
  ACLKM1_RS12390 - 2583078..2584430 (+) 1353 WP_411689656.1 OprD family outer membrane porin -
  ACLKM1_RS12395 ppa 2584530..2585066 (-) 537 WP_074383675.1 inorganic diphosphatase -
  ACLKM1_RS12400 - 2585189..2585587 (-) 399 WP_411689655.1 MAPEG family protein -
  ACLKM1_RS12405 - 2585688..2586068 (+) 381 WP_074383676.1 hypothetical protein -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 54577.53 Da        Isoelectric Point: 6.9510

>NTDB_id=1107105 ACLKM1_RS12380 WP_218208705.1 2580197..2581687(+) (comM) [Acinetobacter pseudolwoffii strain M5_NDM]
MSFAKIYTRGLLGLHAPLIEVEVHVSSGMPSLTIVGLPEAAVRESKDRVRSAILNSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILVASGQLPENCTDDLEFIGELALDGQLRPVTGILSIAIACQHDQHQLMLPGPNAQEACQLPDFKVFAANHL
KEVCEHLAQTQCLAEIQTIPVDTNHFYKCDLADVKGQLRPRRALEIAAAGGHSLLFRGPPGTGKTLLASRLASILPPLKT
QENLEVASIYSVANANHPFGQRPFRAPHHTASAVALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLEAKE
IVISRASRQITFPANFQLVAAMNPCPCGYAFNQDIRCQCSPDSIKRYQNRISGPLLDRIDLHIDVPPLQAYELQDNRPTE
DSETVRQRVIAAYEIQMQRQNSLNMSLSPKQLEHYAGLDQTAQNMLELAQQKLNLSARGYHRVLRVARTIADLNQSTEIQ
SQHLSEALSYRGQQQI

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=1107105 ACLKM1_RS12380 WP_218208705.1 2580197..2581687(+) (comM) [Acinetobacter pseudolwoffii strain M5_NDM]
ATGTCTTTTGCCAAAATTTATACGCGAGGCTTGCTTGGCCTGCACGCGCCTTTAATTGAAGTCGAGGTTCATGTCAGTTC
CGGCATGCCTTCACTCACGATTGTGGGGCTTCCTGAAGCCGCAGTCCGGGAAAGTAAAGACCGGGTGCGTTCTGCCATTT
TAAATAGTGGCTTTCAGTTTCCGACCAAACGCCTGACCATTAATCTGGCTCCAGCAGATCTACCGAAAGATGGTTCGCGT
CTGGATTTACCGATTGCTTTAGGTATTTTGGTCGCCTCCGGACAGCTTCCGGAAAACTGCACCGATGATCTTGAGTTTAT
TGGAGAATTGGCTCTCGATGGTCAACTTCGCCCAGTCACAGGGATCCTGAGCATTGCGATTGCCTGTCAACATGATCAGC
ATCAACTGATGCTGCCGGGTCCGAATGCACAAGAAGCCTGCCAACTCCCGGACTTTAAGGTCTTTGCTGCCAATCATCTA
AAAGAGGTGTGTGAGCATCTTGCTCAGACGCAGTGCTTAGCAGAAATACAAACCATCCCAGTCGATACCAACCATTTTTA
TAAATGTGATCTTGCCGATGTCAAAGGCCAATTGCGGCCACGGCGTGCACTGGAAATTGCAGCAGCGGGTGGCCATTCCC
TGCTGTTTCGAGGACCACCGGGGACAGGAAAAACCTTGCTCGCATCTCGATTAGCCAGTATTTTACCGCCTTTAAAAACC
CAGGAAAATCTGGAAGTTGCCAGTATTTATTCAGTCGCCAATGCCAATCATCCTTTTGGCCAGCGGCCGTTTCGAGCACC
GCATCATACCGCTTCTGCGGTTGCATTGGTCGGTGGCGGCTCACACCCCAAACCGGGTGAAATTACGCTGGCGCATTTGG
GCGTGTTATTTCTGGATGAATTGCCTGAATTTGATCGAAAGGTACTGGAAGTTTTGCGCCAGCCTCTGGAAGCCAAAGAA
ATTGTGATTTCACGTGCATCACGTCAGATCACTTTTCCAGCCAATTTTCAACTGGTGGCTGCCATGAATCCTTGCCCATG
CGGTTATGCCTTTAATCAGGATATTCGCTGCCAGTGTTCGCCTGACAGTATCAAGCGCTATCAGAACCGGATTTCAGGGC
CGCTGCTGGATCGGATTGATTTACATATTGATGTACCGCCCTTACAGGCGTATGAGTTACAGGATAATCGGCCGACAGAG
GACTCTGAAACGGTCAGACAACGCGTGATAGCAGCTTATGAGATTCAGATGCAACGGCAAAATAGCTTGAATATGAGTTT
GAGTCCAAAACAGTTAGAACATTATGCTGGCTTGGATCAGACTGCCCAGAATATGCTTGAACTGGCTCAACAAAAACTGA
ATTTATCCGCACGTGGCTATCATCGGGTATTACGGGTGGCACGTACCATTGCTGATTTAAATCAAAGCACAGAAATCCAG
AGTCAGCATCTGTCTGAAGCTTTGTCTTATCGGGGACAGCAACAGATCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-139)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.102

100

0.514
  comM Legionella pneumophila strain ERS1305867

51.411

100

0.514
  comM Legionella pneumophila str. Paris

51.411

100

0.514
  comM Vibrio cholerae strain A1552

50.4

100

0.508
  comM Glaesserella parasuis strain SC1401

49.206

100

0.5
  comM Vibrio campbellii strain DS40M4

49.4

100

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.012

100

0.476

Multiple sequence alignment