Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACLKM2_RS12335 Genome accession   NZ_CP183899
Coordinates   2592222..2593712 (+) Length   496 a.a.
NCBI ID   WP_100357789.1    Uniprot ID   A0A2H9UL23
Organism   Acinetobacter pseudolwoffii strain M8_NDM_tet(X3)     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2587222..2598712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM2_RS12310 ribD 2588144..2589232 (-) 1089 WP_005169044.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  ACLKM2_RS12315 nrdR 2589235..2589699 (-) 465 WP_005094481.1 transcriptional regulator NrdR -
  ACLKM2_RS12320 - 2589840..2591252 (-) 1413 WP_180040931.1 ammonium transporter -
  ACLKM2_RS12325 glnK 2591312..2591650 (-) 339 WP_005094485.1 P-II family nitrogen regulator -
  ACLKM2_RS12330 - 2591928..2592155 (+) 228 WP_005094487.1 accessory factor UbiK family protein -
  ACLKM2_RS12335 comM 2592222..2593712 (+) 1491 WP_100357789.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACLKM2_RS12340 - 2593762..2594493 (-) 732 WP_370982089.1 TorF family putative porin -
  ACLKM2_RS12345 - 2595105..2596457 (+) 1353 WP_411686346.1 OprD family outer membrane porin -
  ACLKM2_RS12350 ppa 2596557..2597093 (-) 537 WP_074383675.1 inorganic diphosphatase -
  ACLKM2_RS12355 - 2597216..2597614 (-) 399 WP_005094494.1 MAPEG family protein -
  ACLKM2_RS12360 - 2597715..2598095 (+) 381 WP_074383676.1 hypothetical protein -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 54522.46 Da        Isoelectric Point: 7.0970

>NTDB_id=1107067 ACLKM2_RS12335 WP_100357789.1 2592222..2593712(+) (comM) [Acinetobacter pseudolwoffii strain M8_NDM_tet(X3)]
MSFAKIYTRGLLGLHAPLIEVEVHVSSGMPSLTIVGLPEAAVRESKDRVRSAILNSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILVASGQLPENCTDDLEFIGELALDGQLRPVTGILSIAIACQHDQHQLMLPGPNAQEACQLPDFKVFAANHL
KEVCEHLAQTQCLAEIQTIPANTNHFYKCDLADVKGQLRPRRALEIAAAGGHSLLFRGPPGTGKTLLASRLASILPPLKT
QENLEVASIYSVANANHPFGQRPFRAPHHTASAVALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLEAKE
IVISRASRQITFPANFQLVAAMNPCPCGYAFNQDIRCQCSPDSIKRYQNRISGPLLDRIDLHIDVPPLQAHELQDNRPTE
DSETVRQRVIAAYEIQMQRQNSLNMSLSPKQLEHYAGLDQTAQNMLELAQQKLNLSARGYHRVLRVARTIADLNQSTEIQ
SQHLSEALSYRGQQQI

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=1107067 ACLKM2_RS12335 WP_100357789.1 2592222..2593712(+) (comM) [Acinetobacter pseudolwoffii strain M8_NDM_tet(X3)]
ATGTCTTTTGCCAAAATTTATACGCGAGGCTTGCTTGGCCTGCACGCGCCTTTAATTGAAGTCGAGGTTCATGTCAGTTC
CGGCATGCCTTCACTCACGATTGTGGGGCTTCCTGAAGCCGCAGTCCGGGAAAGTAAAGACCGGGTGCGTTCTGCCATTT
TAAATAGTGGCTTTCAGTTTCCGACCAAACGCCTGACCATTAATCTGGCTCCAGCAGATCTACCGAAAGATGGTTCGCGT
CTGGATTTACCGATTGCTTTAGGTATTTTGGTCGCCTCCGGACAGCTTCCGGAAAACTGCACCGATGATCTTGAGTTTAT
TGGAGAATTGGCTCTCGATGGTCAACTTCGCCCAGTCACAGGGATCCTGAGCATTGCGATTGCCTGTCAACATGATCAGC
ATCAACTGATGCTGCCGGGTCCGAATGCACAAGAAGCCTGCCAACTCCCGGACTTTAAGGTCTTTGCTGCCAATCATCTA
AAAGAGGTGTGTGAGCATCTTGCTCAGACGCAGTGCTTAGCAGAAATACAAACCATCCCAGCCAATACCAACCATTTTTA
TAAATGTGATCTTGCCGATGTCAAAGGCCAATTGCGGCCACGGCGTGCATTGGAAATTGCAGCAGCGGGTGGCCATTCCC
TGCTGTTTCGAGGACCACCGGGGACAGGAAAAACCTTACTCGCATCTCGATTAGCCAGTATTTTACCGCCTTTAAAAACC
CAGGAAAATCTGGAAGTTGCCAGTATTTATTCAGTCGCCAATGCCAATCATCCTTTTGGCCAGCGGCCGTTTCGAGCACC
GCATCATACTGCTTCTGCGGTTGCACTGGTCGGTGGCGGCTCACACCCCAAACCGGGTGAAATTACGCTGGCGCATTTGG
GCGTGTTATTTCTGGATGAATTGCCTGAATTTGATCGAAAGGTACTGGAAGTTTTGCGCCAGCCTCTGGAAGCCAAAGAA
ATTGTGATTTCACGTGCATCACGTCAGATCACTTTTCCAGCCAATTTTCAACTGGTGGCTGCCATGAATCCTTGCCCATG
CGGTTATGCCTTTAATCAGGATATTCGCTGCCAATGTTCGCCTGACAGTATCAAGCGCTATCAGAACCGGATTTCAGGGC
CGCTGCTGGATCGGATTGATTTACATATTGATGTACCGCCCTTACAGGCGCATGAGTTACAGGATAATCGGCCGACAGAG
GACTCTGAAACGGTCAGACAACGCGTGATAGCAGCTTATGAGATTCAGATGCAACGGCAAAATAGCTTGAATATGAGTTT
GAGTCCAAAGCAGCTAGAACATTATGCTGGCTTGGATCAGACTGCCCAGAATATGCTTGAACTGGCTCAACAAAAACTGA
ATTTATCCGCACGTGGCTATCATCGGGTATTACGGGTGGCACGTACTATTGCTGATTTAAATCAAAGCACAGAAATCCAG
AGTCAGCATCTGTCTGAAGCTTTGTCTTATCGGGGACAGCAACAGATCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-139)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2H9UL23

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila str. Paris

51.411

100

0.514
  comM Legionella pneumophila strain ERS1305867

51.411

100

0.514
  comM Haemophilus influenzae Rd KW20

50.701

100

0.51
  comM Vibrio cholerae strain A1552

50.4

100

0.508
  comM Glaesserella parasuis strain SC1401

49.405

100

0.502
  comM Vibrio campbellii strain DS40M4

49.4

100

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.012

100

0.476

Multiple sequence alignment