Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACLKM5_RS00985 Genome accession   NZ_CP183893
Coordinates   213151..214641 (-) Length   496 a.a.
NCBI ID   WP_411687585.1    Uniprot ID   -
Organism   Acinetobacter indicus strain D10_NDM_tet(X3)     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 208151..219641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM5_RS00960 - 208628..209008 (-) 381 WP_104470544.1 hypothetical protein -
  ACLKM5_RS00965 - 209112..209513 (+) 402 WP_411687584.1 MAPEG family protein -
  ACLKM5_RS00970 ppa 209631..210155 (+) 525 WP_005181532.1 inorganic diphosphatase -
  ACLKM5_RS00975 - 210257..211558 (-) 1302 WP_180061732.1 OprD family outer membrane porin -
  ACLKM5_RS00980 - 212314..213078 (+) 765 WP_411687592.1 TorF family putative porin -
  ACLKM5_RS00985 comM 213151..214641 (-) 1491 WP_411687585.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACLKM5_RS00990 - 214711..214938 (-) 228 WP_005181545.1 accessory factor UbiK family protein -
  ACLKM5_RS00995 glnK 215215..215553 (+) 339 WP_004650081.1 P-II family nitrogen regulator -
  ACLKM5_RS01000 - 215616..217019 (+) 1404 WP_075174920.1 ammonium transporter -
  ACLKM5_RS01005 nrdR 217159..217617 (+) 459 WP_005181550.1 transcriptional regulator NrdR -
  ACLKM5_RS01010 ribD 217641..218729 (+) 1089 WP_411687586.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 54060.07 Da        Isoelectric Point: 8.0418

>NTDB_id=1106914 ACLKM5_RS00985 WP_411687585.1 213151..214641(-) (comM) [Acinetobacter indicus strain D10_NDM_tet(X3)]
MSFAKIYTRGLLGLNAPSIEVEVHLSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPEQAAENLEFIGELALDGQLRPVTGTLSIAIACQAAGHQLVLPEPNAQEAAQLPDFQVFAASHL
KQVCEHLAQAAPLQPFAASSETRLERYAFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLASILPPLNM
QKNLEVASIYSIANTPHRFGQRPFRAPHHTASAIALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPASFQLIAAMNPCPCGYAFNQDIRCQCSAESIKRYQNRISGPLLDRIDLHIDVPPLQAHELHDKTAVE
NSDTVRQRVIQAYERQMQRQGMLNMNLSPKQLEQFAALATPAQNMMDLAQQRLNLSARAYHRVLRVARSIADLAESSEIQ
TAHLSEALSYRAQSSP

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=1106914 ACLKM5_RS00985 WP_411687585.1 213151..214641(-) (comM) [Acinetobacter indicus strain D10_NDM_tet(X3)]
ATGTCTTTTGCCAAAATTTATACGCGGGGTCTGCTTGGACTGAATGCCCCGTCCATTGAAGTTGAAGTCCATTTAAGTCA
GGGTCTGCCCTCCTTAACCATTGTCGGTCTGGCCGAAGCCGCGGTCCGTGAAAGTAAAGACCGGGTTCGCTCGGCCATTA
TTAACAGTGGTTTTCAGTTTCCCACCAAACGTTTGACCATTAATCTGGCCCCGGCCGATTTACCCAAAGATGGCTCACGT
CTGGATTTACCGATTGCCTTAGGCATTCTGATTGCTTCCGGACAATTGCCCGAACAGGCCGCAGAAAACCTGGAATTTAT
TGGTGAACTGGCGCTGGATGGCCAGTTACGCCCGGTCACCGGCACTTTAAGTATTGCCATTGCCTGTCAGGCGGCCGGCC
ATCAACTGGTATTACCGGAACCCAATGCACAGGAAGCCGCACAATTGCCCGACTTTCAGGTGTTTGCGGCCAGTCATCTG
AAACAGGTCTGTGAGCATCTGGCGCAGGCTGCGCCCCTACAGCCTTTTGCAGCAAGCTCGGAAACCCGCTTGGAACGCTA
TGCTTTTGACCTGGCGGATGTCAAAGGACAGCTGCGACCTCGGCGTGCCCTGGAAATTGCCGCTGCCGGTGGCCATTCCT
TGCTCTTTAAAGGTCCACCCGGTACAGGCAAGACTCTCTTGGCCTCACGTCTGGCCAGTATTTTGCCGCCCCTGAATATG
CAGAAAAATCTTGAAGTTGCCAGTATTTATTCAATTGCCAATACCCCGCATCGCTTTGGACAGCGGCCATTTCGCGCCCC
GCATCATACCGCTTCAGCGATTGCGCTGGTCGGTGGTGGCTCACATCCAAAACCGGGCGAAATTACCCTGGCCCATTTAG
GTGTGCTGTTTTTAGATGAACTGCCGGAGTTTGACCGTAAAGTGCTGGAAGTATTGCGGCAGCCCTTGGAATCCAAGGAA
ATTGTAATTTCCCGGGCATCGCGGCAGATTACCTTTCCGGCCAGTTTCCAGCTGATTGCCGCGATGAACCCCTGCCCGTG
TGGCTATGCGTTTAATCAGGATATTCGCTGCCAATGTTCCGCAGAAAGTATTAAACGCTACCAGAACCGAATTTCTGGCC
CACTCCTGGACCGGATTGATTTGCATATTGATGTACCACCATTACAGGCCCATGAGTTACATGATAAAACTGCGGTGGAA
AACTCAGATACGGTTCGCCAGCGGGTGATTCAGGCCTATGAACGGCAAATGCAACGCCAAGGTATGCTGAATATGAACTT
AAGTCCAAAACAGCTGGAACAGTTTGCTGCCTTAGCCACACCAGCACAGAACATGATGGATCTGGCCCAGCAGCGCTTAA
ACCTGTCGGCTCGCGCCTATCATCGGGTCTTAAGAGTGGCGCGCAGTATTGCCGATTTGGCCGAAAGTAGCGAGATTCAA
ACTGCTCATTTATCGGAAGCGCTGTCTTATCGGGCGCAGTCCAGCCCATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila str. Paris

50.806

100

0.508
  comM Legionella pneumophila strain ERS1305867

50.806

100

0.508
  comM Vibrio cholerae strain A1552

50.605

100

0.506
  comM Haemophilus influenzae Rd KW20

49.701

100

0.502
  comM Vibrio campbellii strain DS40M4

50

100

0.5
  comM Glaesserella parasuis strain SC1401

49.6

100

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.85

100

0.468

Multiple sequence alignment