Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   ACLKM6_RS12605 Genome accession   NZ_CP183890
Coordinates   2621832..2622551 (-) Length   239 a.a.
NCBI ID   WP_411686675.1    Uniprot ID   -
Organism   Acinetobacter indicus strain D11_NDM_tet(X5)     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2616832..2627551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLKM6_RS12585 aroB 2617419..2618501 (-) 1083 WP_075167859.1 3-dehydroquinate synthase -
  ACLKM6_RS12590 aroK 2618524..2619066 (-) 543 WP_104487954.1 shikimate kinase AroK -
  ACLKM6_RS12595 pilQ 2619103..2621244 (-) 2142 WP_411686736.1 type IV pilus secretin PilQ Machinery gene
  ACLKM6_RS12600 pilP 2621305..2621832 (-) 528 WP_045795346.1 pilus assembly protein PilP Machinery gene
  ACLKM6_RS12605 pilO 2621832..2622551 (-) 720 WP_411686675.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACLKM6_RS12610 pilN 2622548..2623183 (-) 636 WP_005180516.1 PilN domain-containing protein Machinery gene
  ACLKM6_RS12615 pilM 2623183..2624241 (-) 1059 WP_104505685.1 pilus assembly protein PilM Machinery gene
  ACLKM6_RS12620 ponA 2624413..2626989 (+) 2577 WP_411686674.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 27119.71 Da        Isoelectric Point: 5.1311

>NTDB_id=1106906 ACLKM6_RS12605 WP_411686675.1 2621832..2622551(-) (pilO) [Acinetobacter indicus strain D11_NDM_tet(X5)]
MSLDQYEEMNQDTVAAPKRKMTLDKFLQQWNTLDPNNYGSWPFSVKLTIWIFIIILIAFLGYFLAIKPKLDAISNARAQE
QNLLNEFREKDSKLRNLQQYQAQLQEMEANFNQQLQQLPKETEIPGLVEDVNVTGVNSGLRFKNIRLENEIKQEFFIEQP
ISIEATGDYHAFGSFVSGTAALPRIVTMHDFTITAGENKEKKTDIPQITYVAKAKTYRYVGNTDAQAGNSTTPATGAAQ

Nucleotide


Download         Length: 720 bp        

>NTDB_id=1106906 ACLKM6_RS12605 WP_411686675.1 2621832..2622551(-) (pilO) [Acinetobacter indicus strain D11_NDM_tet(X5)]
ATGAGTCTCGATCAATATGAAGAAATGAATCAGGATACTGTTGCTGCGCCAAAGAGAAAAATGACGCTGGATAAATTCCT
GCAGCAATGGAATACCTTAGATCCGAATAACTATGGCAGCTGGCCGTTTTCCGTCAAGCTGACCATCTGGATCTTTATCA
TTATTTTAATTGCCTTCCTGGGCTATTTCCTGGCCATCAAGCCGAAGCTGGATGCAATTTCCAATGCGCGTGCACAAGAG
CAGAACCTGCTGAATGAGTTTCGTGAAAAAGATTCCAAACTGCGTAACTTGCAGCAATATCAGGCGCAGTTACAGGAAAT
GGAAGCCAACTTTAACCAGCAGCTACAACAGTTGCCAAAAGAAACCGAAATTCCAGGTCTGGTTGAAGATGTCAACGTTA
CGGGCGTGAATTCAGGCTTAAGATTTAAAAATATCCGTCTGGAAAATGAAATCAAGCAAGAGTTCTTTATCGAGCAGCCA
ATTTCGATTGAAGCCACCGGTGATTATCATGCTTTTGGTTCTTTTGTGAGCGGTACAGCCGCTTTACCGCGAATTGTGAC
CATGCATGATTTCACTATTACTGCCGGTGAAAACAAGGAAAAGAAAACCGATATTCCACAAATTACCTATGTCGCGAAAG
CCAAGACCTATCGCTATGTCGGGAATACCGATGCACAGGCCGGTAATAGTACGACTCCAGCCACAGGAGCAGCACAATGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

69.328

99.582

0.69
  comO Acinetobacter baylyi ADP1

66.803

100

0.682

Multiple sequence alignment