Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACN4IM_RS23085 | Genome accession | NZ_CP183859 |
| Coordinates | 4752616..4753146 (-) | Length | 176 a.a. |
| NCBI ID | WP_155024110.1 | Uniprot ID | - |
| Organism | Enterobacter hormaechei strain K1326 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 4747856..4768434 | 4752616..4753146 | within | 0 |
Gene organization within MGE regions
Location: 4747856..4768434
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACN4IM_RS23030 | - | 4747856..4748086 (-) | 231 | WP_048206849.1 | hypothetical protein | - |
| ACN4IM_RS23035 | - | 4748129..4748620 (-) | 492 | WP_047355337.1 | HNH endonuclease | - |
| ACN4IM_RS23040 | - | 4748620..4748835 (-) | 216 | WP_250119842.1 | TraR/DksA family transcriptional regulator | - |
| ACN4IM_RS23045 | - | 4748927..4749118 (-) | 192 | WP_250119843.1 | DUF1382 family protein | - |
| ACN4IM_RS23050 | - | 4749115..4749726 (-) | 612 | WP_148407394.1 | hypothetical protein | - |
| ACN4IM_RS23055 | - | 4749723..4749940 (-) | 218 | Protein_4493 | hypothetical protein | - |
| ACN4IM_RS23060 | - | 4749937..4750707 (-) | 771 | WP_250119844.1 | dcm methylase | - |
| ACN4IM_RS23065 | - | 4750704..4751306 (-) | 603 | WP_250119845.1 | HNH endonuclease | - |
| ACN4IM_RS23070 | - | 4751290..4751931 (-) | 642 | WP_250119846.1 | MT-A70 family methyltransferase | - |
| ACN4IM_RS23075 | - | 4751928..4752080 (-) | 153 | WP_006809793.1 | DUF1317 family protein | - |
| ACN4IM_RS23080 | - | 4752080..4752409 (-) | 330 | WP_155024111.1 | hypothetical protein | - |
| ACN4IM_RS23085 | ssb | 4752616..4753146 (-) | 531 | WP_155024110.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| ACN4IM_RS23090 | - | 4753147..4753872 (-) | 726 | WP_227440460.1 | Rad52/Rad22 family DNA repair protein | - |
| ACN4IM_RS23095 | - | 4753869..4754027 (-) | 159 | WP_227440458.1 | hypothetical protein | - |
| ACN4IM_RS23100 | - | 4754024..4754221 (-) | 198 | WP_001303341.1 | hypothetical protein | - |
| ACN4IM_RS23105 | - | 4754230..4755198 (-) | 969 | WP_250119847.1 | hypothetical protein | - |
| ACN4IM_RS23110 | - | 4755275..4755550 (-) | 276 | WP_250119848.1 | hypothetical protein | - |
| ACN4IM_RS23115 | - | 4755537..4755710 (-) | 174 | WP_172703122.1 | host cell division inhibitory peptide Kil | - |
| ACN4IM_RS23120 | - | 4755707..4755865 (-) | 159 | WP_250119849.1 | hypothetical protein | - |
| ACN4IM_RS23125 | - | 4756294..4756503 (+) | 210 | WP_023303584.1 | hypothetical protein | - |
| ACN4IM_RS23130 | - | 4756490..4756810 (-) | 321 | WP_032652783.1 | hypothetical protein | - |
| ACN4IM_RS23135 | - | 4757110..4757307 (+) | 198 | WP_063132386.1 | hypothetical protein | - |
| ACN4IM_RS23140 | - | 4757521..4757643 (-) | 123 | WP_255250421.1 | hypothetical protein | - |
| ACN4IM_RS23145 | - | 4757682..4758029 (-) | 348 | WP_039024874.1 | hypothetical protein | - |
| ACN4IM_RS23150 | - | 4758265..4758984 (-) | 720 | WP_063132398.1 | S24 family peptidase | - |
| ACN4IM_RS23155 | - | 4759102..4759323 (+) | 222 | WP_000608751.1 | helix-turn-helix domain-containing protein | - |
| ACN4IM_RS23160 | - | 4759354..4759896 (+) | 543 | WP_059364194.1 | toxin YdaT family protein | - |
| ACN4IM_RS23165 | - | 4759986..4760132 (+) | 147 | WP_015571544.1 | hypothetical protein | - |
| ACN4IM_RS23170 | - | 4760125..4761024 (+) | 900 | WP_063404804.1 | hypothetical protein | - |
| ACN4IM_RS23175 | - | 4761014..4762447 (+) | 1434 | WP_250119850.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| ACN4IM_RS23180 | - | 4762447..4762791 (+) | 345 | WP_250119851.1 | ArsR/SmtB family transcription factor | - |
| ACN4IM_RS23185 | - | 4762788..4763084 (+) | 297 | WP_017693170.1 | DUF4406 domain-containing protein | - |
| ACN4IM_RS23190 | - | 4763081..4763368 (+) | 288 | WP_200832751.1 | hypothetical protein | - |
| ACN4IM_RS23195 | - | 4763365..4763673 (+) | 309 | WP_250119852.1 | ead/Ea22-like family protein | - |
| ACN4IM_RS23200 | - | 4763676..4763852 (+) | 177 | WP_016239854.1 | hypothetical protein | - |
| ACN4IM_RS23205 | - | 4763863..4764621 (+) | 759 | WP_250119853.1 | hypothetical protein | - |
| ACN4IM_RS23210 | - | 4764808..4765257 (+) | 450 | WP_250119854.1 | recombination protein NinB | - |
| ACN4IM_RS23215 | - | 4765250..4765420 (+) | 171 | WP_103269807.1 | NinE family protein | - |
| ACN4IM_RS23220 | - | 4765413..4766024 (+) | 612 | WP_250119855.1 | recombination protein NinG | - |
| ACN4IM_RS23225 | - | 4766021..4766404 (+) | 384 | WP_045345375.1 | hypothetical protein | - |
| ACN4IM_RS23230 | - | 4766401..4766517 (+) | 117 | WP_017383030.1 | hypothetical protein | - |
| ACN4IM_RS23235 | - | 4766517..4767140 (+) | 624 | WP_250119856.1 | hypothetical protein | - |
| ACN4IM_RS23245 | - | 4767702..4768007 (+) | 306 | WP_122008274.1 | phage holin family protein | - |
| ACN4IM_RS23250 | - | 4767994..4768434 (+) | 441 | WP_023306050.1 | lysozyme | - |
Sequence
Protein
Download Length: 176 a.a. Molecular weight: 18893.90 Da Isoelectric Point: 5.2550
>NTDB_id=1106517 ACN4IM_RS23085 WP_155024110.1 4752616..4753146(-) (ssb) [Enterobacter hormaechei strain K1326]
MASKGVNKVILVGNLGQEPEVRYLPSGGAVCSVTLATSESWRDKATGELKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGSQNQQQSGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF
MASKGVNKVILVGNLGQEPEVRYLPSGGAVCSVTLATSESWRDKATGELKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGSQNQQQSGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF
Nucleotide
Download Length: 531 bp
>NTDB_id=1106517 ACN4IM_RS23085 WP_155024110.1 4752616..4753146(-) (ssb) [Enterobacter hormaechei strain K1326]
ATGGCTAGCAAAGGCGTAAATAAAGTGATCCTCGTCGGCAACCTCGGGCAAGAACCCGAGGTCCGTTATCTTCCGTCCGG
CGGCGCAGTATGCAGCGTGACGCTGGCGACATCAGAGTCATGGCGAGATAAAGCCACCGGCGAGCTCAAAGAGCAAACGG
AATGGCACCGCGTCGTTCTGTTCGGAAAGCTGGCTGAGGTGGCCGGGGAGTACCTGCGCAAGGGCTCTCAGGTTTATATC
GAGGGTCAACTGCGCACCCGCAAATGGACAGATCAATCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTCAACGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCAGGTGGCAGTCAGAACCAGCAGCAGAGTGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCT
GCTCCGTCTAACGAACCGCCAATGGACTTCGACGACGACATCCCTTTTTAA
ATGGCTAGCAAAGGCGTAAATAAAGTGATCCTCGTCGGCAACCTCGGGCAAGAACCCGAGGTCCGTTATCTTCCGTCCGG
CGGCGCAGTATGCAGCGTGACGCTGGCGACATCAGAGTCATGGCGAGATAAAGCCACCGGCGAGCTCAAAGAGCAAACGG
AATGGCACCGCGTCGTTCTGTTCGGAAAGCTGGCTGAGGTGGCCGGGGAGTACCTGCGCAAGGGCTCTCAGGTTTATATC
GAGGGTCAACTGCGCACCCGCAAATGGACAGATCAATCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTCAACGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCAGGTGGCAGTCAGAACCAGCAGCAGAGTGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCT
GCTCCGTCTAACGAACCGCCAATGGACTTCGACGACGACATCCCTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
72.778 |
100 |
0.744 |
| ssb | Glaesserella parasuis strain SC1401 |
55.676 |
100 |
0.585 |
| ssb | Neisseria meningitidis MC58 |
44.944 |
100 |
0.455 |
| ssb | Neisseria gonorrhoeae MS11 |
44.944 |
100 |
0.455 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
35.556 |
100 |
0.364 |