Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACN4IL_RS23330 | Genome accession | NZ_CP183853 |
| Coordinates | 4784676..4785206 (-) | Length | 176 a.a. |
| NCBI ID | WP_155024110.1 | Uniprot ID | - |
| Organism | Enterobacter hormaechei strain K814 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 4778421..4801848 | 4784676..4785206 | within | 0 |
Gene organization within MGE regions
Location: 4778421..4801848
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACN4IL_RS23265 | - | 4778421..4779575 (-) | 1155 | WP_230679803.1 | site-specific integrase | - |
| ACN4IL_RS23270 | - | 4779458..4779853 (-) | 396 | WP_341870075.1 | helix-turn-helix domain-containing protein | - |
| ACN4IL_RS23275 | - | 4779916..4780146 (-) | 231 | WP_048206849.1 | hypothetical protein | - |
| ACN4IL_RS23280 | - | 4780189..4780680 (-) | 492 | WP_047355337.1 | HNH endonuclease | - |
| ACN4IL_RS23285 | - | 4780680..4780895 (-) | 216 | WP_250119842.1 | TraR/DksA family transcriptional regulator | - |
| ACN4IL_RS23290 | - | 4780987..4781178 (-) | 192 | WP_250119843.1 | DUF1382 family protein | - |
| ACN4IL_RS23295 | - | 4781175..4781786 (-) | 612 | WP_148407394.1 | hypothetical protein | - |
| ACN4IL_RS23300 | - | 4781783..4782000 (-) | 218 | Protein_4542 | hypothetical protein | - |
| ACN4IL_RS23305 | - | 4781997..4782767 (-) | 771 | WP_250119844.1 | dcm methylase | - |
| ACN4IL_RS23310 | - | 4782764..4783366 (-) | 603 | WP_250119845.1 | HNH endonuclease | - |
| ACN4IL_RS23315 | - | 4783350..4783991 (-) | 642 | WP_250119846.1 | MT-A70 family methyltransferase | - |
| ACN4IL_RS23320 | - | 4783988..4784140 (-) | 153 | WP_006809793.1 | DUF1317 family protein | - |
| ACN4IL_RS23325 | - | 4784140..4784469 (-) | 330 | WP_155024111.1 | hypothetical protein | - |
| ACN4IL_RS23330 | ssb | 4784676..4785206 (-) | 531 | WP_155024110.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| ACN4IL_RS23335 | - | 4785207..4785932 (-) | 726 | WP_227440460.1 | Rad52/Rad22 family DNA repair protein | - |
| ACN4IL_RS23340 | - | 4785929..4786087 (-) | 159 | WP_227440458.1 | hypothetical protein | - |
| ACN4IL_RS23345 | - | 4786084..4786281 (-) | 198 | WP_001303341.1 | hypothetical protein | - |
| ACN4IL_RS23350 | - | 4786290..4787258 (-) | 969 | WP_250119847.1 | hypothetical protein | - |
| ACN4IL_RS23355 | - | 4787335..4787610 (-) | 276 | WP_250119848.1 | hypothetical protein | - |
| ACN4IL_RS23360 | - | 4787597..4787770 (-) | 174 | WP_172703122.1 | host cell division inhibitory peptide Kil | - |
| ACN4IL_RS23365 | - | 4787767..4787925 (-) | 159 | WP_250119849.1 | hypothetical protein | - |
| ACN4IL_RS23370 | - | 4788354..4788563 (+) | 210 | WP_023303584.1 | hypothetical protein | - |
| ACN4IL_RS23375 | - | 4788550..4788870 (-) | 321 | WP_032652783.1 | hypothetical protein | - |
| ACN4IL_RS23380 | - | 4789170..4789367 (+) | 198 | WP_063132386.1 | hypothetical protein | - |
| ACN4IL_RS23385 | - | 4789581..4789703 (-) | 123 | WP_255250421.1 | hypothetical protein | - |
| ACN4IL_RS23390 | - | 4789742..4790089 (-) | 348 | WP_039024874.1 | hypothetical protein | - |
| ACN4IL_RS23395 | - | 4790325..4791044 (-) | 720 | WP_063132398.1 | S24 family peptidase | - |
| ACN4IL_RS23400 | - | 4791162..4791383 (+) | 222 | WP_000608751.1 | helix-turn-helix domain-containing protein | - |
| ACN4IL_RS23405 | - | 4791414..4791956 (+) | 543 | WP_059364194.1 | toxin YdaT family protein | - |
| ACN4IL_RS23410 | - | 4792046..4792192 (+) | 147 | WP_015571544.1 | hypothetical protein | - |
| ACN4IL_RS23415 | - | 4792185..4793084 (+) | 900 | WP_063404804.1 | hypothetical protein | - |
| ACN4IL_RS23420 | - | 4793074..4794507 (+) | 1434 | WP_250119850.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| ACN4IL_RS23425 | - | 4794507..4794851 (+) | 345 | WP_250119851.1 | ArsR/SmtB family transcription factor | - |
| ACN4IL_RS23430 | - | 4794848..4795144 (+) | 297 | WP_017693170.1 | DUF4406 domain-containing protein | - |
| ACN4IL_RS23435 | - | 4795141..4795428 (+) | 288 | WP_200832751.1 | hypothetical protein | - |
| ACN4IL_RS23440 | - | 4795425..4795733 (+) | 309 | WP_250119852.1 | ead/Ea22-like family protein | - |
| ACN4IL_RS23445 | - | 4795736..4795912 (+) | 177 | WP_016239854.1 | hypothetical protein | - |
| ACN4IL_RS23450 | - | 4795923..4796681 (+) | 759 | WP_250119853.1 | hypothetical protein | - |
| ACN4IL_RS23455 | - | 4796868..4797317 (+) | 450 | WP_250119854.1 | recombination protein NinB | - |
| ACN4IL_RS23460 | - | 4797310..4797480 (+) | 171 | WP_103269807.1 | NinE family protein | - |
| ACN4IL_RS23465 | - | 4797473..4798084 (+) | 612 | WP_250119855.1 | recombination protein NinG | - |
| ACN4IL_RS23470 | - | 4798081..4798464 (+) | 384 | WP_045345375.1 | hypothetical protein | - |
| ACN4IL_RS23475 | - | 4798461..4798577 (+) | 117 | WP_017383030.1 | hypothetical protein | - |
| ACN4IL_RS23480 | - | 4798577..4799200 (+) | 624 | WP_250119856.1 | hypothetical protein | - |
| ACN4IL_RS23490 | - | 4799762..4800067 (+) | 306 | WP_122008274.1 | phage holin family protein | - |
| ACN4IL_RS23495 | - | 4800054..4800494 (+) | 441 | WP_023306050.1 | lysozyme | - |
| ACN4IL_RS23500 | - | 4800491..4800964 (+) | 474 | WP_252078738.1 | lysis system i-spanin subunit Rz | - |
| ACN4IL_RS23505 | - | 4801162..4801848 (+) | 687 | WP_152811027.1 | Rha family transcriptional regulator | - |
Sequence
Protein
Download Length: 176 a.a. Molecular weight: 18893.90 Da Isoelectric Point: 5.2550
>NTDB_id=1106494 ACN4IL_RS23330 WP_155024110.1 4784676..4785206(-) (ssb) [Enterobacter hormaechei strain K814]
MASKGVNKVILVGNLGQEPEVRYLPSGGAVCSVTLATSESWRDKATGELKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGSQNQQQSGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF
MASKGVNKVILVGNLGQEPEVRYLPSGGAVCSVTLATSESWRDKATGELKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGSQNQQQSGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF
Nucleotide
Download Length: 531 bp
>NTDB_id=1106494 ACN4IL_RS23330 WP_155024110.1 4784676..4785206(-) (ssb) [Enterobacter hormaechei strain K814]
ATGGCTAGCAAAGGCGTAAATAAAGTGATCCTCGTCGGCAACCTCGGGCAAGAACCCGAGGTCCGTTATCTTCCGTCCGG
CGGCGCAGTATGCAGCGTGACGCTGGCGACATCAGAGTCATGGCGAGATAAAGCCACCGGCGAGCTCAAAGAGCAAACGG
AATGGCACCGCGTCGTTCTGTTCGGAAAGCTGGCTGAGGTGGCCGGGGAGTACCTGCGCAAGGGCTCTCAGGTTTATATC
GAGGGTCAACTGCGCACCCGCAAATGGACAGATCAATCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTCAACGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCAGGTGGCAGTCAGAACCAGCAGCAGAGTGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCT
GCTCCGTCTAACGAACCGCCAATGGACTTCGACGACGACATCCCTTTTTAA
ATGGCTAGCAAAGGCGTAAATAAAGTGATCCTCGTCGGCAACCTCGGGCAAGAACCCGAGGTCCGTTATCTTCCGTCCGG
CGGCGCAGTATGCAGCGTGACGCTGGCGACATCAGAGTCATGGCGAGATAAAGCCACCGGCGAGCTCAAAGAGCAAACGG
AATGGCACCGCGTCGTTCTGTTCGGAAAGCTGGCTGAGGTGGCCGGGGAGTACCTGCGCAAGGGCTCTCAGGTTTATATC
GAGGGTCAACTGCGCACCCGCAAATGGACAGATCAATCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTCAACGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCAGGTGGCAGTCAGAACCAGCAGCAGAGTGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCT
GCTCCGTCTAACGAACCGCCAATGGACTTCGACGACGACATCCCTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
72.778 |
100 |
0.744 |
| ssb | Glaesserella parasuis strain SC1401 |
55.676 |
100 |
0.585 |
| ssb | Neisseria meningitidis MC58 |
44.944 |
100 |
0.455 |
| ssb | Neisseria gonorrhoeae MS11 |
44.944 |
100 |
0.455 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
35.556 |
100 |
0.364 |