Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ACN23B_RS04645 Genome accession   NZ_CP183817
Coordinates   1080044..1080409 (-) Length   121 a.a.
NCBI ID   WP_010995103.1    Uniprot ID   Q8YYC1
Organism   Anabaena sp. FACHB-709     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1075044..1085409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN23B_RS04635 (ACN23B_04640) - 1076561..1079482 (-) 2922 WP_044522768.1 methyl-accepting chemotaxis protein -
  ACN23B_RS04640 (ACN23B_04645) - 1079500..1080030 (-) 531 WP_010995102.1 chemotaxis protein CheW -
  ACN23B_RS04645 (ACN23B_04650) pilH 1080044..1080409 (-) 366 WP_010995103.1 response regulator transcription factor Machinery gene
  ACN23B_RS04650 (ACN23B_04655) - 1080682..1081920 (-) 1239 WP_010995104.1 response regulator -
  ACN23B_RS04655 (ACN23B_04660) hmpF 1082335..1084086 (+) 1752 WP_010995105.1 pilus motility taxis protein HmpF -
  ACN23B_RS04660 (ACN23B_04665) tilS 1084312..1085340 (-) 1029 WP_010995106.1 tRNA lysidine(34) synthetase TilS -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13396.55 Da        Isoelectric Point: 4.7266

>NTDB_id=1106282 ACN23B_RS04645 WP_010995103.1 1080044..1080409(-) (pilH) [Anabaena sp. FACHB-709]
MSTVLIVEDSLAQREMITDLLKASGLTVTHATDGLEALEAIKEEPPDLVVLDIVMPKMNGYEVCRRLKSDPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=1106282 ACN23B_RS04645 WP_010995103.1 1080044..1080409(-) (pilH) [Anabaena sp. FACHB-709]
ATGAGTACAGTTCTGATTGTGGAAGACAGTCTTGCACAGAGGGAGATGATTACAGACCTCCTGAAAGCTAGTGGCTTAAC
AGTTACCCATGCAACTGACGGATTAGAAGCATTAGAGGCAATCAAAGAAGAACCTCCCGATCTCGTAGTCCTAGATATTG
TCATGCCCAAAATGAATGGCTACGAAGTTTGCCGTCGATTAAAGTCAGATCCAAAAACCCAAAATGTCCCGGTAGTGATG
TGTTCTTCTAAAGGAGAAGAATTTGACCGCTACTGGGGTATGAAACAAGGTGCGGATGCTTACATAGCAAAACCGTTTCA
ACCAACCGAATTGGTGGGAACAGTCAAACAACTACTGCGAGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8YYC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

75.207

100

0.752
  vicR Streptococcus mutans UA159

40

99.174

0.397
  micA Streptococcus pneumoniae Cp1015

40

99.174

0.397
  pilG Acinetobacter baumannii strain A118

40.351

94.215

0.38
  pilL-C Synechocystis sp. PCC 6803

37.19

100

0.372

Multiple sequence alignment