Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   V3C22_RS00220 Genome accession   NZ_CP183775
Coordinates   30991..31572 (+) Length   193 a.a.
NCBI ID   WP_002273395.1    Uniprot ID   -
Organism   Streptococcus mutans strain Xc     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 25991..36572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3C22_RS00195 (V3C22_00195) - 26330..27298 (+) 969 WP_002263139.1 ribose-phosphate diphosphokinase -
  V3C22_RS00200 (V3C22_00200) - 27387..28562 (+) 1176 WP_226707007.1 pyridoxal phosphate-dependent aminotransferase -
  V3C22_RS00205 (V3C22_00205) recO 28552..29307 (+) 756 WP_019316666.1 DNA repair protein RecO -
  V3C22_RS00210 (V3C22_00210) plsX 29515..30513 (+) 999 WP_002267904.1 phosphate acyltransferase PlsX -
  V3C22_RS00215 (V3C22_00215) - 30515..30763 (+) 249 WP_002263135.1 acyl carrier protein -
  V3C22_RS00220 (V3C22_00220) comA 30991..31572 (+) 582 WP_002273395.1 ATP-binding cassette domain-containing protein Regulator
  V3C22_RS00225 (V3C22_00225) purC 31694..32401 (+) 708 WP_002267902.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  V3C22_RS00230 (V3C22_00230) - 32411..36136 (+) 3726 WP_226707006.1 phosphoribosylformylglycinamidine synthase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21287.26 Da        Isoelectric Point: 4.8780

>NTDB_id=1105917 V3C22_RS00220 WP_002273395.1 30991..31572(+) (comA) [Streptococcus mutans strain Xc]
MGKSGSGKTTLAKILAGYYTVSSGDSFLDGEKINYSQLRQLVTYVPQQSYVFTGTILDNLLLGAEEEVTDDRLMEVCSIA
EILDDIKAMPLGFQTQISADGGLSGGQKQRLAIARALLTRQPVLIFDEATSGLDRDTEEKVIANLSKLDRTIIFIAHRGS
VSYYADRIVEIDSGEKIKDRINHRPFSFLMTTL

Nucleotide


Download         Length: 582 bp        

>NTDB_id=1105917 V3C22_RS00220 WP_002273395.1 30991..31572(+) (comA) [Streptococcus mutans strain Xc]
ATGGGGAAAAGTGGTTCTGGAAAGACAACTTTGGCAAAAATTCTTGCAGGCTATTATACTGTTAGTAGCGGTGACTCTTT
CTTAGATGGAGAAAAGATAAATTATTCTCAGCTGCGCCAATTAGTAACTTATGTGCCACAGCAGTCTTATGTTTTTACAG
GAACAATCTTAGATAATCTGCTTCTTGGTGCTGAAGAGGAAGTAACGGATGATCGCTTAATGGAAGTTTGTTCAATTGCT
GAAATTTTAGACGATATCAAGGCAATGCCTTTAGGTTTTCAAACACAGATTTCAGCAGACGGCGGTTTATCTGGTGGTCA
AAAACAGCGTTTAGCTATTGCACGTGCTCTCTTAACCAGACAGCCTGTGTTGATTTTTGATGAGGCAACTAGCGGTTTAG
ATCGTGATACCGAAGAAAAAGTTATTGCCAATTTATCTAAATTGGATCGCACGATTATTTTTATTGCTCACCGAGGCAGT
GTTTCTTATTATGCTGATCGAATTGTTGAGATTGACTCTGGAGAGAAAATTAAGGACAGAATAAATCATCGTCCTTTCTC
ATTTTTGATGACGACTCTTTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(1-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis NCTC 12261

51.872

96.891

0.503
  comA Streptococcus gordonii str. Challis substr. CH1

52.747

94.301

0.497
  comA/nlmT Streptococcus mutans UA159

49.468

97.409

0.482
  comA Streptococcus pneumoniae R6

50.273

94.819

0.477
  comA Streptococcus pneumoniae Rx1

50.273

94.819

0.477
  comA Streptococcus pneumoniae D39

50.273

94.819

0.477
  comA Streptococcus mitis SK321

49.18

94.819

0.466
  comA Streptococcus pneumoniae TIGR4

49.18

94.819

0.466

Multiple sequence alignment