Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACN2W4_RS17325 Genome accession   NZ_CP183425
Coordinates   3635183..3635713 (+) Length   176 a.a.
NCBI ID   WP_004936793.1    Uniprot ID   A0AAW6X7L8
Organism   Serratia marcescens strain H-12-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3630183..3640713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN2W4_RS17315 (ACN2W4_17315) - 3630941..3631747 (-) 807 WP_419685851.1 MipA/OmpV family protein -
  ACN2W4_RS17320 (ACN2W4_17320) uvrA 3632077..3634905 (-) 2829 WP_070913903.1 excinuclease ABC subunit UvrA -
  ACN2W4_RS17325 (ACN2W4_17325) ssb 3635183..3635713 (+) 531 WP_004936793.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ACN2W4_RS17330 (ACN2W4_17330) - 3635743..3636453 (-) 711 WP_126179229.1 class I SAM-dependent methyltransferase -
  ACN2W4_RS17335 (ACN2W4_17335) - 3636465..3636806 (-) 342 WP_370531229.1 DUF1360 domain-containing protein -
  ACN2W4_RS17340 (ACN2W4_17340) - 3637003..3637479 (+) 477 WP_048325626.1 Rrf2 family transcriptional regulator -
  ACN2W4_RS17345 (ACN2W4_17345) - 3637517..3638266 (-) 750 WP_110158509.1 3-oxoacyl-ACP reductase family protein -
  ACN2W4_RS17350 (ACN2W4_17350) - 3638399..3639316 (+) 918 WP_110158508.1 LysR family transcriptional regulator -
  ACN2W4_RS17355 (ACN2W4_17355) bhsA 3639372..3639632 (-) 261 WP_308353378.1 multiple stress resistance protein BhsA -
  ACN2W4_RS17360 (ACN2W4_17360) - 3639828..3640271 (+) 444 WP_047570370.1 lipocalin-like domain-containing protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18808.71 Da        Isoelectric Point: 5.2358

>NTDB_id=1105713 ACN2W4_RS17325 WP_004936793.1 3635183..3635713(+) (ssb) [Serratia marcescens strain H-12-3]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
ATSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=1105713 ACN2W4_RS17325 WP_004936793.1 3635183..3635713(+) (ssb) [Serratia marcescens strain H-12-3]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAGCAGAAAGAGAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCCCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCGGCGCAGAACAGCGCTCCG
GCAACCAGCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.243

100

0.784
  ssb Glaesserella parasuis strain SC1401

59.14

100

0.625
  ssb Neisseria meningitidis MC58

46.591

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.364

Multiple sequence alignment