Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACNYC6_RS11510 Genome accession   NZ_CP183416
Coordinates   2575382..2576443 (-) Length   353 a.a.
NCBI ID   WP_419712403.1    Uniprot ID   -
Organism   Pseudomonas sp. NFX224     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2570382..2581443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNYC6_RS11485 (ACNYC6_11485) aroK 2571066..2571584 (-) 519 WP_047536474.1 shikimate kinase AroK -
  ACNYC6_RS11490 (ACNYC6_11490) pilQ 2571589..2573658 (-) 2070 WP_419712399.1 type IV pilus secretin PilQ Machinery gene
  ACNYC6_RS11495 (ACNYC6_11495) - 2573672..2574199 (-) 528 WP_419712400.1 pilus assembly protein PilP -
  ACNYC6_RS11500 (ACNYC6_11500) pilO 2574196..2574819 (-) 624 WP_419712401.1 type 4a pilus biogenesis protein PilO -
  ACNYC6_RS11505 (ACNYC6_11505) - 2574816..2575382 (-) 567 WP_419712402.1 PilN domain-containing protein -
  ACNYC6_RS11510 (ACNYC6_11510) comM 2575382..2576443 (-) 1062 WP_419712403.1 pilus assembly protein PilM Machinery gene
  ACNYC6_RS11515 (ACNYC6_11515) - 2576661..2579099 (+) 2439 WP_419712949.1 penicillin-binding protein 1A -
  ACNYC6_RS11520 (ACNYC6_11520) - 2580024..2581292 (-) 1269 WP_419712404.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38017.52 Da        Isoelectric Point: 4.7461

>NTDB_id=1105649 ACNYC6_RS11510 WP_419712403.1 2575382..2576443(-) (comM) [Pseudomonas sp. NFX224]
MPGLFNKKASTLLGIDISSTSVKLLELSRQGDRYRVEAYAVEPLPASAVIEKNIAELEGVGQALSRVLIKARTSLKNVAV
AVAGSAVITKAIEMDAGLSDDEMESQLKIEADQYIPYPLDEVAIDFEVQGASVRNPERVNVLLAACRKENVEVREAALTL
AGLTARVVDVEAYALERSFGLLANQLAGSRERLVAVVDIGATMTTLSVLLNGRIIYTREQLFGGRQLTEEIQRRYGMTVE
QAGLAKKQGGLPDDYVSEVLQPFREALVQQVSRSLQFFFASGQYHSVDHILLAGGTASVSGLDRLIEQQLGTPTQVANPF
AEMTLSSKVNAAALSSDAPAMMIACGLALRSFD

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=1105649 ACNYC6_RS11510 WP_419712403.1 2575382..2576443(-) (comM) [Pseudomonas sp. NFX224]
GTGCCAGGACTCTTCAATAAAAAAGCCAGTACGCTTTTAGGGATCGACATCAGCTCCACTTCGGTGAAGCTCCTTGAGCT
GAGCCGCCAAGGCGACCGCTATCGGGTCGAGGCCTACGCGGTCGAGCCGCTGCCTGCCAGCGCGGTGATCGAGAAAAACA
TCGCCGAGCTCGAAGGTGTGGGCCAGGCTCTCTCGCGGGTTCTGATCAAGGCCAGAACCAGCCTCAAGAACGTCGCGGTG
GCCGTGGCCGGTTCGGCGGTGATCACCAAGGCCATCGAAATGGATGCCGGTCTTTCCGACGACGAGATGGAAAGCCAGCT
GAAGATAGAGGCCGATCAGTACATCCCTTATCCGTTGGACGAGGTCGCCATCGACTTTGAAGTCCAGGGCGCGTCTGTAC
GCAACCCCGAGCGAGTCAATGTGCTGCTCGCGGCGTGTCGCAAGGAAAACGTCGAGGTGCGTGAAGCGGCCCTGACATTG
GCCGGCCTGACCGCCCGTGTGGTCGATGTCGAGGCCTATGCCCTGGAGCGATCGTTCGGCCTGCTGGCGAATCAATTGGC
CGGCTCCCGGGAGCGTCTGGTGGCGGTGGTCGACATTGGCGCGACCATGACCACCCTGAGCGTGCTGCTGAACGGGCGGA
TCATCTATACCCGCGAACAATTGTTCGGCGGTCGTCAATTGACCGAAGAGATTCAGCGACGATACGGGATGACTGTCGAG
CAGGCGGGGTTGGCAAAGAAGCAGGGCGGTTTGCCTGACGATTACGTCAGTGAAGTGCTGCAGCCGTTTCGCGAGGCCTT
GGTGCAGCAGGTCTCGCGTTCGCTGCAGTTTTTCTTCGCTTCCGGTCAGTACCACTCGGTCGATCACATTTTGCTGGCCG
GCGGCACCGCGTCAGTCTCCGGTCTGGATCGTTTGATCGAGCAGCAATTGGGCACGCCGACGCAGGTGGCCAACCCGTTT
GCCGAGATGACGCTGAGCAGCAAGGTCAACGCCGCGGCACTGAGTAGCGACGCTCCGGCCATGATGATCGCCTGCGGGCT
GGCCCTCAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-352)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

54.857

99.15

0.544
  pilM Acinetobacter baumannii D1279779

54.571

99.15

0.541
  comM Acinetobacter baylyi ADP1

54

99.15

0.535
  pilM Legionella pneumophila strain ERS1305867

47.74

100

0.479

Multiple sequence alignment