Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACN2C8_RS08315 Genome accession   NZ_CP183332
Coordinates   1693973..1694482 (+) Length   169 a.a.
NCBI ID   WP_419255380.1    Uniprot ID   -
Organism   Caulobacter sp. ErkDOM-C     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1688973..1699482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN2C8_RS08295 (ACN2C8_08295) - 1689253..1689807 (+) 555 WP_419255374.1 GNAT family N-acetyltransferase -
  ACN2C8_RS08300 (ACN2C8_08300) - 1689886..1692705 (+) 2820 WP_419255376.1 hypothetical protein -
  ACN2C8_RS08305 (ACN2C8_08305) - 1692753..1693433 (+) 681 WP_419255377.1 hypothetical protein -
  ACN2C8_RS08310 (ACN2C8_08310) - 1693447..1693842 (+) 396 WP_419255379.1 hypothetical protein -
  ACN2C8_RS08315 (ACN2C8_08315) ssb 1693973..1694482 (+) 510 WP_419255380.1 single-stranded DNA-binding protein Machinery gene
  ACN2C8_RS08320 (ACN2C8_08320) dusA 1694620..1695723 (+) 1104 WP_419255382.1 tRNA dihydrouridine(20/20a) synthase DusA -
  ACN2C8_RS08325 (ACN2C8_08325) - 1695834..1696349 (-) 516 WP_419255383.1 TIGR02281 family clan AA aspartic protease -
  ACN2C8_RS08330 (ACN2C8_08330) - 1696606..1696938 (+) 333 WP_419255384.1 hypothetical protein -
  ACN2C8_RS08335 (ACN2C8_08335) - 1696942..1697157 (-) 216 WP_419255386.1 DUF1289 domain-containing protein -
  ACN2C8_RS08340 (ACN2C8_08340) - 1697237..1697563 (+) 327 WP_419255388.1 hypothetical protein -
  ACN2C8_RS08345 (ACN2C8_08345) - 1697611..1698492 (+) 882 WP_419255390.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 17830.58 Da        Isoelectric Point: 5.3338

>NTDB_id=1105339 ACN2C8_RS08315 WP_419255380.1 1693973..1694482(+) (ssb) [Caulobacter sp. ErkDOM-C]
MAGSVNKVILVGNLGADPEIRSLGSGDRVANLRIATSESWRDRTSGERKEKTEWHRVVIFNDNLVKVAEQYLRKGSTVYI
EGAIQTRKWTDNTGAEKYSTEIVLQKFRGELTMLGGRADGAGASSGGGDDGYSSGGGGGGGGYGGGAPRSQPSGPRESFS
ADLDDEIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=1105339 ACN2C8_RS08315 WP_419255380.1 1693973..1694482(+) (ssb) [Caulobacter sp. ErkDOM-C]
ATGGCGGGCAGCGTCAACAAGGTCATTCTGGTGGGCAACCTCGGGGCCGATCCCGAAATCCGCAGCCTGGGTTCCGGTGA
CCGCGTCGCCAATCTGCGCATCGCCACCTCGGAAAGCTGGCGCGATCGCACCTCCGGCGAGCGCAAGGAAAAGACCGAGT
GGCACCGGGTCGTGATCTTCAACGACAATCTGGTGAAGGTAGCTGAGCAGTATCTGCGCAAGGGCTCGACGGTCTATATC
GAGGGCGCGATCCAGACCCGCAAATGGACCGACAATACCGGCGCCGAAAAGTATTCCACCGAGATCGTGCTGCAGAAGTT
CCGGGGTGAACTGACCATGCTGGGCGGTCGCGCCGACGGCGCAGGCGCCTCGTCGGGCGGTGGCGATGACGGCTACTCCA
GCGGCGGCGGCGGTGGCGGTGGCGGCTATGGTGGCGGCGCGCCGCGCAGCCAGCCTAGCGGCCCGCGCGAGAGCTTCTCG
GCCGACCTCGACGACGAGATCCCTTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.286

100

0.521
  ssb Glaesserella parasuis strain SC1401

43.85

100

0.485
  ssb Neisseria meningitidis MC58

39.459

100

0.432
  ssb Neisseria gonorrhoeae MS11

39.459

100

0.432

Multiple sequence alignment