Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACNVED_RS03185 Genome accession   NZ_CP183303
Coordinates   715351..716871 (-) Length   506 a.a.
NCBI ID   WP_419420319.1    Uniprot ID   -
Organism   Legionella sp. D16C41     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 710351..721871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNVED_RS03160 (ACNVED_03160) - 710691..710921 (-) 231 WP_419420314.1 cold-shock protein -
  ACNVED_RS03165 (ACNVED_03165) - 711307..712827 (-) 1521 WP_419420315.1 FMN-binding glutamate synthase family protein -
  ACNVED_RS03170 (ACNVED_03170) - 713309..713875 (+) 567 WP_419420316.1 YqgE/AlgH family protein -
  ACNVED_RS03175 (ACNVED_03175) ruvX 713942..714358 (+) 417 WP_419420317.1 Holliday junction resolvase RuvX -
  ACNVED_RS03180 (ACNVED_03180) - 714373..715272 (+) 900 WP_419420318.1 aspartate carbamoyltransferase catalytic subunit -
  ACNVED_RS03185 (ACNVED_03185) comM 715351..716871 (-) 1521 WP_419420319.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACNVED_RS03190 (ACNVED_03190) - 716915..717184 (-) 270 WP_419420320.1 accessory factor UbiK family protein -
  ACNVED_RS03195 (ACNVED_03195) - 717345..717686 (+) 342 WP_419420321.1 P-II family nitrogen regulator -
  ACNVED_RS03200 (ACNVED_03200) - 717720..718184 (-) 465 WP_419420322.1 EVE domain-containing protein -
  ACNVED_RS03205 (ACNVED_03205) - 718181..718759 (-) 579 WP_419420323.1 5-formyltetrahydrofolate cyclo-ligase -
  ACNVED_RS03210 (ACNVED_03210) - 719608..719787 (+) 180 WP_419420324.1 PA3496 family putative envelope integrity protein -
  ACNVED_RS03215 (ACNVED_03215) - 719788..720600 (+) 813 WP_419420325.1 aminotransferase class IV -
  ACNVED_RS03220 (ACNVED_03220) - 720816..721013 (+) 198 WP_419420326.1 hypothetical protein -
  ACNVED_RS03225 (ACNVED_03225) icmT 721143..721403 (+) 261 WP_419420327.1 IcmT/TraK family protein -
  ACNVED_RS03230 (ACNVED_03230) - 721405..721755 (+) 351 WP_419420328.1 type IV secretion IcmS family protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55686.41 Da        Isoelectric Point: 9.0832

>NTDB_id=1105168 ACNVED_RS03185 WP_419420319.1 715351..716871(-) (comM) [Legionella sp. D16C41]
MNLAFSKTRSALGIDARCVSVEVHLSNGLPSFTIVGLAQTAVKESKDRVRSAVINSQFEFPCRKITINLAPADLPKAGSG
FDLPIAIGILAASKQISPNKLINHEFIGELALSGEIKPVPSIIPMILAAMREQKTLIIPEGNANEAAITGYQNIYTAKSL
REVCGYLCQSEVTLKSLPARLTSSYDETVDWSEIKGQYYAKKAMIIAAAGGHSILLSGPPGSGKTMLAKRFRTLLPLLSE
LQALECAAINSTYNRSFNYQTWRLPPFRSPHHTASPVSLVGGGNPPKPGEISLAHHGVLFLDELPEFSKQVLETLREPLE
SGNICISRAAIQTEFPAQFQLIAAMNPCPCGHWGNSQSNCRCTPEKISRYLAKLSGPLLDRIDMHVQVQALRPEELIKQP
ADNKENTSSNLRVLIENTRNLQVKRQGVINTKLNIKDCERLCNLTSEKQDFLHQAITQLKLSGRAYHRLLKVARTIADLE
VQEDVTLKILKQALSFRHVLQAPTVY

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1105168 ACNVED_RS03185 WP_419420319.1 715351..716871(-) (comM) [Legionella sp. D16C41]
ATGAATCTTGCATTTAGCAAAACGCGAAGTGCGTTAGGTATAGACGCGCGCTGTGTATCTGTAGAAGTCCATTTATCCAA
TGGTTTACCAAGTTTTACTATTGTTGGCCTTGCACAAACTGCTGTAAAGGAAAGTAAAGATCGTGTCCGAAGTGCTGTAA
TTAACAGCCAATTTGAATTTCCCTGCCGTAAAATTACGATTAATTTAGCCCCTGCTGATTTACCAAAAGCTGGCAGTGGT
TTTGATTTACCCATTGCCATAGGTATTCTTGCCGCATCAAAACAAATTTCTCCTAACAAATTAATTAATCATGAATTTAT
CGGTGAATTAGCATTAAGCGGCGAAATTAAACCTGTTCCAAGTATAATACCCATGATTCTTGCTGCTATGCGCGAACAAA
AAACGTTAATTATACCAGAAGGAAATGCTAATGAGGCAGCTATTACAGGTTATCAAAACATTTATACGGCTAAAAGCTTA
CGCGAAGTTTGTGGATATTTATGTCAAAGTGAGGTAACTCTAAAGAGTTTACCTGCCCGCTTGACAAGCTCTTATGATGA
AACAGTAGATTGGTCAGAGATAAAAGGTCAATATTATGCCAAAAAAGCAATGATTATAGCAGCTGCAGGTGGCCATAGTA
TTTTGCTAAGCGGGCCACCAGGCAGTGGCAAAACTATGCTTGCGAAACGTTTTAGAACGCTATTACCCTTACTTTCTGAG
CTACAAGCTTTAGAGTGTGCAGCTATTAATTCCACTTATAATCGCTCCTTTAATTATCAAACCTGGCGCCTACCTCCTTT
TCGGTCTCCTCATCACACCGCATCACCCGTATCCTTAGTCGGTGGCGGTAACCCACCTAAACCTGGTGAAATTTCTTTAG
CTCACCATGGTGTTTTATTTCTTGATGAGTTACCAGAGTTTAGTAAACAAGTTTTAGAAACTCTACGAGAGCCTTTAGAA
TCAGGTAATATTTGTATTTCTCGAGCAGCTATTCAAACCGAGTTTCCTGCTCAATTTCAGCTAATAGCGGCAATGAACCC
TTGTCCTTGTGGGCATTGGGGTAATTCACAATCTAATTGCCGTTGTACACCTGAAAAAATTAGCCGTTATCTAGCTAAGT
TATCTGGTCCACTATTAGATAGAATTGATATGCATGTTCAAGTACAAGCTCTTCGTCCTGAAGAATTAATAAAACAACCA
GCAGATAATAAAGAGAATACCAGTAGTAACTTACGTGTACTTATAGAGAATACCCGTAATTTGCAAGTCAAACGACAGGG
AGTCATTAATACTAAATTAAATATTAAAGACTGTGAGCGATTATGTAACCTTACTTCTGAAAAACAAGATTTTTTACATC
AGGCAATTACCCAATTAAAATTATCAGGTCGCGCCTATCATCGTCTATTGAAAGTAGCAAGAACTATTGCTGATTTAGAA
GTACAAGAAGACGTTACTCTAAAAATTTTAAAGCAAGCACTATCTTTTAGACACGTATTACAAGCACCGACTGTCTACTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila str. Paris

67.589

100

0.676
  comM Legionella pneumophila strain ERS1305867

67.589

100

0.676
  comM Vibrio cholerae strain A1552

50.501

98.617

0.498
  comM Haemophilus influenzae Rd KW20

49.109

99.802

0.49
  comM Vibrio campbellii strain DS40M4

49.197

98.419

0.484
  comM Glaesserella parasuis strain SC1401

48.413

99.605

0.482
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.052

98.221

0.413

Multiple sequence alignment